PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010937700.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | C2H2 | ||||||||
Protein Properties | Length: 168aa MW: 18744.6 Da PI: 8.8823 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11 | 0.0014 | 41 | 63 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ F++ L H +H XP_010937700.1 41 FECKTCNRQFPSFQALGGHRASH 63 89**********99999998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.22E-8 | 39 | 108 | No hit | No description |
Pfam | PF13912 | 2.7E-13 | 40 | 65 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.827 | 41 | 68 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.16 | 41 | 63 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 43 | 63 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.3E-9 | 86 | 110 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.099 | 86 | 113 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.5 | 86 | 108 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 88 | 108 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 168 aa Download sequence Send to blast |
MKRFREGDQV ESIDMANVLM LLARGGQEMG HLTQDSPGRV FECKTCNRQF PSFQALGGHR 60 ASHKKPRLMG DGHGQAQNAL AKPKLHECSI CGLEFAIGQA LGGHMRRHRP ATEGLRPGLA 120 EKKPDGKRVL WLDLNRPPTE LLDNVECRKV GLSFEFVEKT SMVVDCFH |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010937700.1 | 1e-122 | zinc finger protein ZAT12-like | ||||
TrEMBL | A0A2H3Z309 | 1e-108 | A0A2H3Z309_PHODC; zinc finger protein ZAT12 | ||||
STRING | XP_008807730.1 | 1e-109 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP501 | 37 | 157 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28710.1 | 4e-35 | C2H2 family protein |