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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010937538.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | bHLH | ||||||||
Protein Properties | Length: 239aa MW: 26394.2 Da PI: 8.3326 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 30.4 | 6.8e-10 | 84 | 129 | 6 | 54 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 rE+ RRdr+N++f eL ++l + + +K +K++iL A++ +++L XP_010937538.1 84 AGREKMRRDRLNDRFTELCSILDPG---RPPKADKIAILSDATHLLNQL 129 569*********************8...89**************99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.827 | 78 | 129 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.9E-7 | 83 | 129 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.5E-5 | 84 | 135 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 9.42E-12 | 86 | 151 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.66E-5 | 86 | 134 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.2E-11 | 86 | 151 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MEGIGGRMGS SGGGREEGWL LEFGLVDELN QASDFIWAPK IVEKPTASRV IIGFDGLRRD 60 SSLDNSSSRK RGRVESCSAA GTKAGREKMR RDRLNDRFTE LCSILDPGRP PKADKIAILS 120 DATHLLNQLH LEAEKLKESN ETLQDAIKSL KAEKLELRDE KVRLKAEKER MEQMLRGFSL 180 ASPFVPHPAA AAATFHAASF AACSKTIPYT NYLPTCMWQW MPPAALDTSQ DLALRPPVA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Plays a role in resistance to amide-linked indole-3-acetic acid (IAA) conjugates such as IAA-Leu and IAA-Phe. May regulate gene expression in response to metal homeostasis changes. {ECO:0000269|PubMed:17028341}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010937538.1 | 1e-176 | transcription factor bHLH115 isoform X1 | ||||
Swissprot | Q9FH37 | 5e-60 | ILR3_ARATH; Transcription factor ILR3 | ||||
TrEMBL | A0A2H3YSG1 | 1e-130 | A0A2H3YSG1_PHODC; transcription factor bHLH115-like | ||||
STRING | XP_008803141.1 | 1e-130 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9386 | 31 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G54680.1 | 2e-53 | bHLH family protein |