PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010937439.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C2H2
Protein Properties Length: 384aa    MW: 41404.8 Da    PI: 7.3314
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010937439.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.72.5e-07164185223
                     EETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                      C++Cgk F+r  nL+ H+r H
  XP_010937439.1 164 FCEICGKGFKRDANLRMHMRAH 185
                     6*******************99 PP
2zf-C2H212.20.00054254277123
                     EEETTTT.EEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCg.ksFsrksnLkrHirtH 23 
                     ++C+ C+ ksFs   +L++Hi+ +
  XP_010937439.1 254 FSCHRCSkKSFSVMADLRSHIKHC 277
                     89*******************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.49E-6160186No hitNo description
Gene3DG3DSA:3.30.160.605.4E-6163185IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0015163185IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.967163190IPR007087Zinc finger, C2H2
PROSITE patternPS000280165185IPR007087Zinc finger, C2H2
SMARTSM0035585216249IPR015880Zinc finger, C2H2-like
SMARTSM0035530254276IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MIGSGSRNPG HPSAGIDPSS IPISAARGGD DSRSDPMASA DPGLPLLNLS VLGQRMDFLR  60
RFLSDSVDRR ASLAGDQLQL VSAEIASAVH QTILNGAALL ASSQRSGPIP MAAVDPAVGR  120
AADQIVSGPD PASSAVAEED GDAVEEGDIV EIDAAELLAE QVHFCEICGK GFKRDANLRM  180
HMRAHGNQFK TLEAFSKPPE QDGRRPDGGD GRKVRFSCPF AGCNRNRCHG RFRPLKSVVC  240
VKNHFKRSHC PKMFSCHRCS KKSFSVMADL RSHIKHCGET RWRCSCGTSF SRKDKLFGHV  300
ALFKGHLPAV GVGEEELVVG GGEDIGRGGG EPVGGDSFDL EFFERLMKEL EGIEGGNWSA  360
RQASNSMVPS YYHQQLLHSF CCLF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010937439.10.0protein SENSITIVE TO PROTON RHIZOTOXICITY 1
TrEMBLA0A2H3XYY50.0A0A2H3XYY5_PHODC; protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like
STRINGXP_008790878.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125503236
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.23e-70C2H2 family protein