PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010937367.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | ERF | ||||||||
Protein Properties | Length: 310aa MW: 34311.7 Da PI: 8.6466 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51.1 | 3.4e-16 | 147 | 196 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++kGVr +k +g+Wv+e+r p++ rk+ +lg++ ae+Aa+a++aa +l+g XP_010937367.1 147 RFKGVRMRK-WGKWVVEVRLPRS---RKKLWLGSYADAEKAARAYDAAVYCLKG 196 69*****99.**********844...4************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.29E-22 | 147 | 205 | No hit | No description |
PROSITE profile | PS51032 | 21.47 | 147 | 204 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.4E-9 | 147 | 196 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.7E-28 | 147 | 210 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.2E-10 | 148 | 159 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.42E-18 | 148 | 205 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 5.4E-26 | 148 | 205 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.2E-10 | 186 | 206 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 310 aa Download sequence Send to blast |
MNFNGSVRDG RGDAGFIICD PDARMLAVGG CHLFEHSVLG AELHAAWIDI IFTRQQLHAE 60 RIFLEDDSAT VISWIQGGQR SACVTDRHVA RDIRFAAQFK SAHSRLLRPL PLSNPRKRIP 120 SSQRIMEPGS GNQPRTPRTE EPARAVRFKG VRMRKWGKWV VEVRLPRSRK KLWLGSYADA 180 EKAARAYDAA VYCLKGPDAV LNFPERRPDI PSASNLSLPE IRAAAMAHAH DRPRRSVDQA 240 GPAEAGEVGR TEVAVEHGDL SPIFSPEIST TAVHGMWNEE AEKPGNGSGG EDEIGDIYSS 300 SLWNFGTRFN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-12 | 147 | 204 | 14 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019710022.2 | 0.0 | ethylene-responsive transcription factor ERF025-like | ||||
TrEMBL | A0A2H3XPS2 | 8e-47 | A0A2H3XPS2_PHODC; ethylene-responsive transcription factor ERF017-like | ||||
STRING | XP_008786978.1 | 1e-47 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP861 | 32 | 144 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19210.1 | 2e-22 | ERF family protein |