PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010937198.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

NAC

Protein Properties

Length: 360aa MW: 40124.2 Da PI: 6.3272

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010937198.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	179.6	8.2e-56	17	143	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeel+++yL kkv + ++++ ++i evd++k+ePw+Lp ++k +e+ewyfF+ rd+ky+tg r+nrat++gyWkatgkdke+++ XP_010937198.1 17 LPPGFRFHPTDEELITHYLSKKVMDVSFNA-RAIGEVDLNKWEPWELPWRAKMGENEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYR- 109 79*************************9.89***********888999************************************. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrle 129 +++lvg+kktLvfy+grapkgek++Wvmheyrle XP_010937198.1 110 GKSLVGMKKTLVFYRGRAPKGEKSNWVMHEYRLE 143 999***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.01E-63	13	167	IPR003441	NAC domain
PROSITE profile	PS51005	59.693	17	167	IPR003441	NAC domain
Pfam	PF02365	3.3E-29	18	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence Send to blast
MEHGAVVPQE GEENMDLPPG FRFHPTDEEL ITHYLSKKVM DVSFNARAIG EVDLNKWEPW 60 ELPWRAKMGE NEWYFFCVRD RKYPTGLRTN RATEAGYWKA TGKDKEIYRG KSLVGMKKTL 120 VFYRGRAPKG EKSNWVMHEY RLEGKYSVYN LPKTAKNEWV ICRVFQKTSS GKKAMGLVRV 180 GSSFGEELDS SLLPPLMEAP FTSENKTSSA SDLAHVTCFS NSVEGPKVHE ELLAEYLNSP 240 FLSASANPSE APPPSLLLAK MSLPSSSHAS QGAPSLGGLQ YSGGSLVQLL ESNGYGLKRS 300 FKSEREMLSV SQETGLTTDM NPEISSVVSN NDMGRQSFDS QEVPSISAGP LHIEESLWNY

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence Send to blast

MEHGAVVPQE GEENMDLPPG FRFHPTDEEL ITHYLSKKVM DVSFNARAIG EVDLNKWEPW  60
ELPWRAKMGE NEWYFFCVRD RKYPTGLRTN RATEAGYWKA TGKDKEIYRG KSLVGMKKTL  120
VFYRGRAPKG EKSNWVMHEY RLEGKYSVYN LPKTAKNEWV ICRVFQKTSS GKKAMGLVRV  180
GSSFGEELDS SLLPPLMEAP FTSENKTSSA SDLAHVTCFS NSVEGPKVHE ELLAEYLNSP  240
FLSASANPSE APPPSLLLAK MSLPSSSHAS QGAPSLGGLQ YSGGSLVQLL ESNGYGLKRS  300
FKSEREMLSV SQETGLTTDM NPEISSVVSN NDMGRQSFDS QEVPSISAGP LHIEESLWNY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-54	3	173	3	171	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-54	3	173	3	171	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-54	3	173	3	171	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-54	3	173	3	171	NO APICAL MERISTEM PROTEIN
4dul_A	3e-54	3	173	3	171	NAC domain-containing protein 19
4dul_B	3e-54	3	173	3	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010937197.1	0.0	NAC domain-containing protein 100
Refseq	XP_010937198.1	0.0	NAC domain-containing protein 100
Refseq	XP_010937199.1	0.0	NAC domain-containing protein 100
Refseq	XP_010937200.1	0.0	NAC domain-containing protein 100
Refseq	XP_010937201.1	0.0	NAC domain-containing protein 100
Refseq	XP_010937202.1	0.0	NAC domain-containing protein 100
Swissprot	Q9FLJ2	1e-131	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A2H3XGV0	0.0	A0A2H3XGV0_PHODC; NAC domain-containing protein 92-like
STRING	XP_008783580.1	0.0	(Phoenix dactylifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G07680.1	1e-121	NAC domain containing protein 80

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]