PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

MYB

Protein Properties

Length: 327aa MW: 36594.1 Da PI: 8.3094

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010937134.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.5	1.3e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ lv +++++G+g+Wk+++ g+ R+ k+c++rw +yl XP_010937134.1 14 KGPWTPEEDLVLVSYIQKHGPGNWKAVPTNTGLMRCSKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	52.2	1.4e-16	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T++E++l++++ ++lG++ W++Ia++++ Rt++++k++w+++l XP_010937134.1 67 RGNFTEQEEKLIIHLQALLGNR-WSAIASYLP-ERTDNDIKNYWNTHL 112 89******************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	18.167	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	5.74E-31	11	108	IPR009057	Homeodomain-like
SMART	SM00717	3.2E-13	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	4.6E-16	14	61	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.7E-24	15	68	IPR009057	Homeodomain-like
CDD	cd00167	8.01E-11	16	61	No hit	No description
PROSITE profile	PS51294	25.313	62	116	IPR017930	Myb domain
SMART	SM00717	1.5E-16	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	1.2E-15	67	112	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.8E-25	69	117	IPR009057	Homeodomain-like
CDD	cd00167	1.04E-11	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
MGRPPYCDKV GVKKGPWTPE EDLVLVSYIQ KHGPGNWKAV PTNTGLMRCS KSCRLRWTNY 60 LRPGIKRGNF TEQEEKLIIH LQALLGNRWS AIASYLPERT DNDIKNYWNT HLRKKLKKLQ 120 ASNDSSMSHG LSSDQSISKG QWERRLQTDI HMAKQALREA LSLGKTNRPT ELMKPSNGSY 180 SFTKPSQPAT SSSTTTYASS TENISRLLKG WMKDPPKPRA AQANSESTQH SINKAVGTDS 240 SSSEEESASV ANNNDRITVP NLFESLLNFD SSTQEMSETS LFQCESKPRS EAQVPLSLLE 300 TWLLDEGFVQ GEVELIDMPL GETSELI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	5e-27	14	116	4	105	MYB PROTO-ONCOGENE PROTEIN
1h8a_C	7e-27	14	116	27	128	MYB TRANSFORMING PROTEIN
1mse_C	5e-27	14	116	4	105	C-Myb DNA-Binding Domain
1msf_C	5e-27	14	116	4	105	C-Myb DNA-Binding Domain
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010937134.2	0.0	myb-related protein 306 isoform X1
Swissprot	P81392	1e-113	MYB06_ANTMA; Myb-related protein 306
TrEMBL	A0A2H3XIA4	1e-169	A0A2H3XIA4_PHODC; myb-related protein 306
STRING	XP_008784211.1	1e-170	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP229	38	296

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47600.1	1e-102	myb domain protein 94

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]