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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | XP_010937084.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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| Family | bHLH | ||||||||
| Protein Properties | Length: 247aa MW: 27223.8 Da PI: 9.892 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 15 | 4.7e-05 | 36 | 85 | 1 | 54 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
+++ + +rE+ R ++N+ f+eL l +a ++ + Ka+iL A++ +++L
XP_010937084.1 36 KKEHKAKREKLKRVHLNELFSELGHALEPA----GQNNGKASILGDATRLLQDL 85
5778899**********************9....89999*********999887 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF47459 | 3.27E-9 | 35 | 99 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| PROSITE profile | PS50888 | 10.398 | 35 | 85 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene3D | G3DSA:4.10.280.10 | 4.9E-7 | 35 | 104 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 247 aa Download sequence Send to blast |
MVTEPPSSMK NVENTIAEQP VGRLVPNKKN TGKVPKKEHK AKREKLKRVH LNELFSELGH 60 ALEPAGQNNG KASILGDATR LLQDLVARLG SLRKENAALV SESHYVAVEK NELKDENAVL 120 GAEIARLRNE LHERMHSDTV WHSGAEVAPP TMPQPTSAAL PVQQSPVGPL YVIPLHQDLH 180 PFSDTGNIAT LKPPSHVRRP HARYPTPSDS WSLELLSRHQ RAAHEALHNT STTIATFNSR 240 KEGTDKA |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_010937082.1 | 0.0 | transcription factor BHLH062 | ||||
| Refseq | XP_010937084.1 | 0.0 | transcription factor BHLH062 | ||||
| TrEMBL | A0A2H3Z3Y4 | 1e-151 | A0A2H3Z3Y4_PHODC; transcription factor BHLH062-like | ||||
| STRING | XP_008808049.1 | 1e-152 | (Phoenix dactylifera) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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| Hit ID | E-value | Description | ||||
| AT3G47640.3 | 2e-31 | bHLH family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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