PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010937078.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family AP2
Protein Properties Length: 381aa    MW: 40914.5 Da    PI: 5.1714
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010937078.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.51.9e-14196255155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV+  k++g+++A+++d  s+  g  ++ k+++lg+++++e+Aa+a++ a++k++g
  XP_010937078.1 196 SSYHGVTKLKWSGKFEAHLWDnTSQvEGrkRKgKHVYLGSYDSEEKAARAHDLAALKYWG 255
                     679******************666696675336*************************98 PP
2AP252.81e-16300353155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpseng.kr..krfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV+++k +g+W A+I  +   g  r  k ++lg+f+t+eeAa+a++ a+ +l+g
  XP_010937078.1 300 SIYRGVTRRK-DGKWQARIGRV---GeSRdaKDIYLGTFDTEEEAAEAYDIAAIELRG 353
                     57*****999.9*******998...443347*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.24E-14196267IPR016177DNA-binding domain
PfamPF008478.9E-12196255IPR001471AP2/ERF domain
CDDcd000189.31E-17196267No hitNo description
SMARTSM003802.8E-23197271IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.8E-14197266IPR001471AP2/ERF domain
PROSITE profilePS5103217.965197265IPR001471AP2/ERF domain
PfamPF008475.6E-11300353IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-18300363IPR016177DNA-binding domain
CDDcd000183.10E-23300363No hitNo description
SMARTSM003806.7E-29301367IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-19301361IPR001471AP2/ERF domain
PROSITE profilePS5103219.335301361IPR001471AP2/ERF domain
PRINTSPR003671.5E-5302313IPR001471AP2/ERF domain
PRINTSPR003671.5E-5327343IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MSQAERSRNP SEDATAPKIP APLLPSLNDS GESLDATPAI EKTVVEPSEA AGPQEDAAPK  60
VDSVAVSAAE EKSDPLEVTS EEKVGSLEDA AVGNEPVRPE VPSRNGEDHN AKKAGSSEAT  120
DCRSLVVSLD APEKSAGGGE VLDATSTAAE KKTDCIEVAN GNGPVVALAA SGKSPEKKVG  180
ILLAAAMKKY AAPRSSSYHG VTKLKWSGKF EAHLWDNTSQ VEGRKRKGKH VYLGSYDSEE  240
KAARAHDLAA LKYWGASTNA KLNFPVSDYE KEIETMKNMS QEEYVAYVRR KSSCFSRGAS  300
IYRGVTRRKD GKWQARIGRV GESRDAKDIY LGTFDTEEEA AEAYDIAAIE LRGVHAVTNF  360
DISNYCEGGL KRLEGPCKLE M
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010937078.10.0AP2-like ethylene-responsive transcription factor BBM1
TrEMBLA0A2H3Z4070.0A0A2H3Z407_PHODC; AP2-like ethylene-responsive transcription factor AIL1
STRINGXP_008808053.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78643548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.12e-66AP2 family protein