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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
XP_010937038.1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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| Family |
NF-YB |
| Protein Properties |
Length: 236aa MW: 25319 Da PI: 6.8876 |
| Description |
NF-YB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_010937038.1 | genome | OG | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NF-YB | 179.7 | 2.7e-56 | 35 | 130 | 2 | 97 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96
+eqdrflPianvsrimk+ +Panakisk+aketvqecvsefisf+t+easdkcqrekrktingddllwa++tlGfe+yv plkvyl+kyre+ege
XP_010937038.1 35 KEQDRFLPIANVSRIMKRSIPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKVYLNKYRETEGE 129
79********************************************************************************************9 PP
NF-YB 97 k 97
k
XP_010937038.1 130 K 130
7 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| GO:0046982 | Molecular Function | protein heterodimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 236 aa
Download sequence Send
to blast |
MKGRRNHHLS PVGSPPSDTE SAAVPLGDGP DSSPKEQDRF LPIANVSRIM KRSIPANAKI 60
SKEAKETVQE CVSEFISFIT GEASDKCQRE KRKTINGDDL LWAMTTLGFE NYVGPLKVYL 120
NKYRETEGEK NSMARQGDQS ANEEGSHNPS SYHGASGAGA MANNNTLTSN ASLMGFNGTF 180
YLARPPVAPQ GFGGGGGRMV FGDHSKIGGF DMDRDNGGGD GNDGKAFPIH IHGVQW
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| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor involved in the regulation of flowering time under long day (LD) conditions. Functions as repressor of flowering, independently of HD1 and GHD7. Controls flowering time by negatively regulating the expression of EHD1 and HD3A (PubMed:20566706, PubMed:21148627). Regulates plant height by promoting cell elongation in the internodes (PubMed:20566706). Component of the NF-Y/HAP transcription factor complex (By similarity). {ECO:0000250, ECO:0000269|PubMed:20566706, ECO:0000269|PubMed:21148627}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Circadian-regulation under long day (LD) conditions. Expression increases in the middle of daytime, peaks around the end of the light period and gradually decreases during the dark period and beginning of daylight. {ECO:0000269|PubMed:26542958}. |
| Publications
? help Back to Top |
- Yan WH, et al.
A major QTL, Ghd8, plays pleiotropic roles in regulating grain productivity, plant height, and heading date in rice.
Mol Plant, 2011. 4(2): p. 319-30
[PMID:21148627] - Dai X, et al.
LHD1, an allele of DTH8/Ghd8, controls late heading date in common wild rice (Oryza rufipogon).
J Integr Plant Biol, 2012. 54(10): p. 790-9
[PMID:22963226] - Kim SK, et al.
OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice.
Planta, 2016. 243(3): p. 563-76
[PMID:26542958]
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