 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
XP_010936843.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
|
| Family |
BBR-BPC |
| Protein Properties |
Length: 278aa MW: 30611.2 Da PI: 10.1786 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_010936843.1 | genome | OG | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 324.2 | 3.9e-99 | 1 | 278 | 1 | 301 |
GAGA_bind 1 mdddgsre.rnkgyyepaaslkenlglqlmssiaerdaki.rernlalsekkaavaerd..maflqrdkalaernkalverdnkllalllvensl 91
mdddg rn+gyye+ k nlglqlmss+ erda +n + +++ ++ae m+f rd ++++ +rdnk+l++l++++
XP_010936843.1 1 MDDDGGLGiRNWGYYEQP--SKGNLGLQLMSSMVERDATKpLLSNGGFLHRECSIAEPSvpMDF-VRDGWIHH------NRDNKILHVLPMSHH- 85
999999999*******99..799**************765477888889999888887667***.9******9......9**********7774. PP
GAGA_bind 92 asalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesader 186
+++++l++ ++l++ l+++ + k ++ p+ e + + +e++ kk +++++ k++k kk+kk s +++ +++++++ +r
XP_010936843.1 86 ----HPNYGMLPDPPGSHTLHM-----LQPPEPP-----KDDKVPVMEDPGVRNETPLKK-KSQGRPLKSPKPKKPKKVS-APR-DEATNGSVSR 163
....467899999999999999.....5555444.....346788888888777776665.7778888999999999954.554.4444454589 PP
GAGA_bind 187 skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsn 281
ka kks++lv+ng++lD+s++P+PvCsCtG+l+qCY+WG GGWqSaCCtt+iS yPLP+stkrrgaRiagrKmSqgafkk+LekLa+eGy+lsn
XP_010936843.1 164 GKAGKKSTGLVINGIDLDISGIPTPVCSCTGKLQQCYRWGVGGWQSACCTTSISCYPLPMSTKRRGARIAGRKMSQGAFKKVLEKLAGEGYNLSN 258
*********************************************************************************************** PP
GAGA_bind 282 pvDLkdhWAkHGtnkfvtir 301
p+DL+++WAkHGtnkfvtir
XP_010936843.1 259 PIDLRTFWAKHGTNKFVTIR 278
*******************8 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 278 aa
Download sequence Send
to blast |
MDDDGGLGIR NWGYYEQPSK GNLGLQLMSS MVERDATKPL LSNGGFLHRE CSIAEPSVPM 60
DFVRDGWIHH NRDNKILHVL PMSHHHPNYG MLPDPPGSHT LHMLQPPEPP KDDKVPVMED 120
PGVRNETPLK KKSQGRPLKS PKPKKPKKVS APRDEATNGS VSRGKAGKKS TGLVINGIDL 180
DISGIPTPVC SCTGKLQQCY RWGVGGWQSA CCTTSISCYP LPMSTKRRGA RIAGRKMSQG 240
AFKKVLEKLA GEGYNLSNPI DLRTFWAKHG TNKFVTIR
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Positively regulates the homeotic gene BKN3. {ECO:0000269|PubMed:12795701}. |
