PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010936826.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

bHLH

Protein Properties

Length: 334aa MW: 36357.5 Da PI: 5.7099

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010936826.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.6	5.9e-10	248	291	7	55
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++ ++RR+ri +++ L++l+P+ K++ +++LekA+ Y+k Lq XP_010936826.1 248 IAAKNRRERISERLKILQDLIPNG-----SKVDLVTMLEKAISYVKFLQ 291 5679*****************5.....5****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.256	241	290	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.44E-13	242	301	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.0E-12	242	299	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.29E-12	243	295	No hit	No description
SMART	SM00353	7.3E-12	247	296	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.3E-7	249	291	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence Send to blast
MALAKERTLE GSQTCSLYGN VHGGGPSIQG LDPSSLELFS YKGQNDVMLE DGGGSESFEG 60 YSGGRLPMLS DPSNSSSGGF VFGSVNSSPQ GTRSIVNVEA GSDHWAYSGS SVLSFEQGDR 120 MLCTNYPNID HEDESAIWMD AMDPNYQLNN FDKKRGKNSC LIQDQCFDMG SGYKLMSNAM 180 NENRQNEEQF GLLCLGAAAG DGHQESVEQE KGIQKCPYMG GELRASKKHR RSTGKTKANS 240 PSKDPQSIAA KNRRERISER LKILQDLIPN GSKVDLVTML EKAISYVKFL QLQVKVLATD 300 EFWPAQGGKA PEVSQVKEAI DAILSSHRNS KSSS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_029123877.1	0.0	transcription factor bHLH83-like
Swissprot	Q9FJ00	4e-52	BH086_ARATH; Putative transcription factor bHLH086
TrEMBL	A0A3Q0HUV8	0.0	A0A3Q0HUV8_PHODC; putative transcription factor bHLH086
STRING	XP_008782563.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1412	38	117

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G37800.1	5e-53	RHD SIX-LIKE 1

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Kim CM,Dolan L ROOT HAIR DEFECTIVE SIX-LIKE Class I Genes Promote Root Hair Development in the Grass Brachypodium distachyon. PLoS Genet., 2016. 12(8): p. e1006211 [PMID:27494519] Feng Y, et al. Ethylene promotes root hair growth through coordinated EIN3/EIL1 and RHD6/RSL1 activity in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(52): p. 13834-13839 [PMID:29233944]