PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010936817.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family HD-ZIP
Protein Properties Length: 200aa    MW: 22748.9 Da    PI: 7.2207
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010936817.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.21.6e-1973128156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     r kR ++++eq++ Le+ F+kn  +s++++eeLA k++Lt rqV vWFqNrRa+ k
  XP_010936817.1  73 RPKRLRLSEEQTQLLEDTFRKNCVLSHSAKEELAPKVKLTPRQVEVWFQNRRARIK 128
                     5799**************************************************87 PP
2HD-ZIP_I/II92.16.3e-3075164291
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                     k++rls+eq +lLE++F+++  L+++ K+ela +++l+prqv+vWFqnrRAR+k+++  ++++ Lk++++ l+een+rL++ev+eL++ l
  XP_010936817.1  75 KRLRLSEEQTQLLEDTFRKNCVLSHSAKEELAPKVKLTPRQVEVWFQNRRARIKLRRAKNECKLLKQRFKLLMEENQRLQQEVKELHALL 164
                     899****************99*****************************************************************9766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.3E-1958130IPR009057Homeodomain-like
SuperFamilySSF466898.13E-1964128IPR009057Homeodomain-like
PROSITE profilePS5007117.4170130IPR001356Homeobox domain
SMARTSM003893.9E-1672134IPR001356Homeobox domain
PfamPF000468.9E-1773128IPR001356Homeobox domain
CDDcd000865.60E-1473128No hitNo description
PROSITE patternPS000270105128IPR017970Homeobox, conserved site
SMARTSM003409.5E-5130173IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MEEPGKSPSG VKQTIAVPGE SFSCGPAGRK VRELDINEPP ADKDEEEKEE EDEEEILMGG  60
ADDSEDGENG NPRPKRLRLS EEQTQLLEDT FRKNCVLSHS AKEELAPKVK LTPRQVEVWF  120
QNRRARIKLR RAKNECKLLK QRFKLLMEEN QRLQQEVKEL HALLVAARTT TIIMCPRCKR  180
VTSVAGIQRC SKTPDTNLSL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010936817.11e-144homeobox-leucine zipper protein HOX3 isoform X2
SwissprotQ0JKX15e-45HOX3_ORYSJ; Homeobox-leucine zipper protein HOX3
SwissprotQ9XH385e-45HOX3_ORYSI; Homeobox-leucine zipper protein HOX3
TrEMBLA0A1D1ZKD35e-43A0A1D1ZKD3_9ARAE; Homeobox-leucine zipper protein HOX3
STRINGMLOC_55339.18e-44(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01430.14e-38homeobox-leucine zipper protein 17