PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010936816.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

HD-ZIP

Protein Properties

Length: 202aa MW: 23006.2 Da PI: 7.221

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010936816.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.2	1.6e-19	75	130	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r kR ++++eq++ Le+ F+kn +s++++eeLA k++Lt rqV vWFqNrRa+ k XP_010936816.1 75 RPKRLRLSEEQTQLLEDTFRKNCVLSHSAKEELAPKVKLTPRQVEVWFQNRRARIK 130 5799**************************************************87 PP
2	HD-ZIP_I/II	92.1	6.4e-30	77	166	2	91
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 k++rls+eq +lLE++F+++ L+++ K+ela +++l+prqv+vWFqnrRAR+k+++ ++++ Lk++++ l+een+rL++ev+eL++ l XP_010936816.1 77 KRLRLSEEQTQLLEDTFRKNCVLSHSAKEELAPKVKLTPRQVEVWFQNRRARIKLRRAKNECKLLKQRFKLLMEENQRLQQEVKELHALL 166 899**************99***************************************************************9766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.3E-19	60	132	IPR009057	Homeodomain-like
SuperFamily	SSF46689	8.55E-19	66	130	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.41	72	132	IPR001356	Homeobox domain
SMART	SM00389	3.9E-16	74	136	IPR001356	Homeobox domain
Pfam	PF00046	9.1E-17	75	130	IPR001356	Homeobox domain
CDD	cd00086	7.30E-14	75	130	No hit	No description
PROSITE pattern	PS00027	0	107	130	IPR017970	Homeobox, conserved site
SMART	SM00340	9.5E-5	132	175	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence Send to blast
MEEPGKSPSG VKQTIAVPGE SFSCGPEKAG RKVRELDINE PPADKDEEEK EEEDEEEILM 60 GGADDSEDGE NGNPRPKRLR LSEEQTQLLE DTFRKNCVLS HSAKEELAPK VKLTPRQVEV 120 WFQNRRARIK LRRAKNECKL LKQRFKLLME ENQRLQQEVK ELHALLVAAR TTTIIMCPRC 180 KRVTSVAGIQ RCSKTPDTNL SL

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269\|PubMed:10732669}.
UniProt	Probable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269\|PubMed:10732669}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010936816.1	1e-145	homeobox-leucine zipper protein HOX3 isoform X1
Swissprot	Q0JKX1	2e-45	HOX3_ORYSJ; Homeobox-leucine zipper protein HOX3
Swissprot	Q9XH38	2e-45	HOX3_ORYSI; Homeobox-leucine zipper protein HOX3
TrEMBL	A0A2H3ZUT2	8e-45	A0A2H3ZUT2_PHODC; homeobox-leucine zipper protein HOX3

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6826	35	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01430.1	5e-38	homeobox-leucine zipper protein 17