PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010936702.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family ZF-HD
Protein Properties Length: 293aa    MW: 32113.6 Da    PI: 7.1861
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010936702.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer88.27.9e-2885135256
     ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRre 56 
                     +++rY+eCl+NhAaslGgh++DGC+Efmp +g+    +a+kCaACgCHR+FHR +
  XP_010936702.1  85 TTIRYRECLRNHAASLGGHVLDGCCEFMPGSGD----DAFKCAACGCHRSFHRID 135
                     579**************************9444....6***************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047702.3E-2387133IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257742.0E-1587135IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.7E-2288133IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152324.53689135IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.601.6E-31212283IPR009057Homeodomain-like
SuperFamilySSF466891.02E-20212282IPR009057Homeodomain-like
PROSITE profilePS500718.778219283IPR001356Homeobox domain
TIGRFAMsTIGR015651.3E-28221277IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MDFRRQDEED EDCDNPNNPP PPPPLIRESA FGRPMLSPAS SLLSPRGGGG GGRNGPNPSS  60
TRSTVTISSS GTGGGADPTA TEADTTIRYR ECLRNHAASL GGHVLDGCCE FMPGSGDDAF  120
KCAACGCHRS FHRIDGDSSP SPSNPNSLYR VHDAARLPLL LPPLHPHPPP PPPPSSYHHH  180
HQKQFFFRSN NAASGGATTE SSSEELNAGA GPPQRPYMAS KKRFRTKFTA EQKERMLDFA  240
ERMGWRIQKQ DEALVEDFCA EVGVSRQVLK VWMHNNKHTI RKQQQQGEEH QDM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-272202791675ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010936702.10.0zinc-finger homeodomain protein 6
SwissprotB8AX535e-57ZHD6_ORYSI; Zinc-finger homeodomain protein 6
TrEMBLA0A2H3XEJ11e-133A0A2H3XEJ1_PHODC; zinc-finger homeodomain protein 6-like
STRINGXP_008782488.11e-134(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81535145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.22e-42homeobox protein 31