PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010936678.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

bHLH

Protein Properties

Length: 388aa MW: 43166.7 Da PI: 6.6141

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010936678.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.8	5.3e-05	285	323	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ ++++ L++l+ + +K + a++L +A+ YIk Lq XP_010936678.1 285 RKEKLGDRIAALQQLVAPF-----GKTDTASVLMEAIGYIKFLQ 323 7788899*******998.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.966	273	322	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	8.24E-11	283	333	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.47E-5	283	327	No hit	No description
Gene3D	G3DSA:4.10.280.10	8.6E-9	287	330	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence Send to blast
MMEPSNLGHH HQDQLHASFF HDLGTNHEWS QSPMLNSGGF ISNADGVLLS SQRDYRLSHE 60 IPPLPLNSHM VQDLGFHWAG SVESFMNQSA YQLNLAKIKE ELPDSFPRLG GVIREPSTIE 120 DYQLEEKLFR TLASDCQINS CQPRSTDLFN DPSLANHGAG RGNLSLVFPT TNISNPWPPM 180 PTFPVSLDMD LEALDLLASA RFDRSIFQPL FSGMGLLRED TPFGLGHLHE PVQVPFHGHH 240 KMPSLVGGAA DAKRANSILE HKASQTEQKK SRFESRSSIS SFKVRKEKLG DRIAALQQLV 300 APFGKTDTAS VLMEAIGYIK FLQDQVETLS VPYLKSSNNK KARIIQEVSN EERDKPKLDL 360 RSRGLCLVPL SCTSYVTNDN GGVWSPPN

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence Send to blast

MMEPSNLGHH HQDQLHASFF HDLGTNHEWS QSPMLNSGGF ISNADGVLLS SQRDYRLSHE  60
IPPLPLNSHM VQDLGFHWAG SVESFMNQSA YQLNLAKIKE ELPDSFPRLG GVIREPSTIE  120
DYQLEEKLFR TLASDCQINS CQPRSTDLFN DPSLANHGAG RGNLSLVFPT TNISNPWPPM  180
PTFPVSLDMD LEALDLLASA RFDRSIFQPL FSGMGLLRED TPFGLGHLHE PVQVPFHGHH  240
KMPSLVGGAA DAKRANSILE HKASQTEQKK SRFESRSSIS SFKVRKEKLG DRIAALQQLV  300
APFGKTDTAS VLMEAIGYIK FLQDQVETLS VPYLKSSNNK KARIIQEVSN EERDKPKLDL  360
RSRGLCLVPL SCTSYVTNDN GGVWSPPN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010936678.1	0.0	transcription factor bHLH110
Refseq	XP_019709955.1	0.0	transcription factor bHLH110
TrEMBL	A0A2H3XJZ2	0.0	A0A2H3XJZ2_PHODC; transcription factor bHLH110-like
STRING	XP_008784940.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7240	32	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27660.1	4e-39	bHLH family protein