PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010936569.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | ERF | ||||||||
Protein Properties | Length: 354aa MW: 39379.7 Da PI: 4.393 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.8 | 1.3e-18 | 43 | 92 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ GVr+++ +grWvAeI+d + ++ r++lg+f+tae+Aa+a+++a+ l+g XP_010936569.1 43 RFVGVRQRP-SGRWVAEIKDtV----QKIRVWLGTFDTAEDAARAYDEAACLLRG 92 689******.7*********55....35**********************99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 2.5E-27 | 43 | 99 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.3E-12 | 43 | 92 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.28E-30 | 43 | 99 | No hit | No description |
SMART | SM00380 | 7.3E-35 | 43 | 106 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.282 | 43 | 100 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-19 | 43 | 100 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 8.6E-8 | 44 | 55 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.6E-8 | 66 | 82 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 354 aa Download sequence Send to blast |
MVRKRKSLVE VKEEGTRVAK TSSWDEAVME AAASGGGRRP RNRFVGVRQR PSGRWVAEIK 60 DTVQKIRVWL GTFDTAEDAA RAYDEAACLL RGASTRTNFW PCSPASHRLP PALPSKIYNH 120 LLMRLKASNS LAGDGAAVPL PENQQPPQQQ QEQCGDEGLD DIDDFQFTDF LNDPNVSDSI 180 LTNNTSFHDD IWKSVQSNCT KEVEQSEREL DQNMVMVGQF GTKVVGEEEE VMGDLEAMDF 240 QFVDSLEGSS CLYSPFEVVE EVTEQIEQEE SGAGDEKWMF ASPMKRMKYE RRISASLYAI 300 SGISECLNLR LGEGRGVHDS TSLGIACEED KGDEVKKVGD GLEVEVENSQ HQAN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010936569.1 | 0.0 | ethylene-responsive transcription factor ERN1-like | ||||
TrEMBL | A0A2H3XQA9 | 0.0 | A0A2H3XQA9_PHODC; ethylene-responsive transcription factor ERN1-like | ||||
STRING | XP_008787214.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5482 | 30 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 2e-21 | related to AP2 11 |