PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

XP_010936459.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

FAR1

Protein Properties

Length: 738aa MW: 83786.6 Da PI: 7.1162

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010936459.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	80.4	3.3e-25	112	197	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fYn+YA vGFsvrksk+ ++++ + rt+vCsk+g+r+++k + +++r+ trtgC a++++k + +g+++vt+++ +HnH la XP_010936459.1 112 FYNSYAACVGFSVRKSKMWTTSK-DVLAARTLVCSKQGFRQKKKGF--EPKKPRPATRTGCPACMTIKITPSGRYRVTEFVPDHNHLLA 197 9*****************955.559***********9988..999*********************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.1E-22	112	197	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	6.8E-26	292	386	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.361	560	607	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	5.8E-5	560	605	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	7.8E-4	582	609	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 738 aa Download sequence Send to blast
MEERMGPAKC ESEAETPTHY PTHSLLARNR SASSLHQTLA SLLPVSHLSA PPSLSRFLAC 60 PSPRGISAVF PSLSFSINQA MGVAEHADVP PNPGWIPHLD MQFDNEDAAY AFYNSYAACV 120 GFSVRKSKMW TTSKDVLAAR TLVCSKQGFR QKKKGFEPKK PRPATRTGCP ACMTIKITPS 180 GRYRVTEFVP DHNHLLANPS TARLLRSHRA KVKERIAGDS GMPPDSSDKH QLKRRKAMPV 240 GDAGAVLEYL QRMQVENPSF FYAVRVDGND SIANFFWADA KSVMDYQYFG DVVCFDMTYK 300 ACDCGRPFAL FVGVNNHKQM IIFGSALLYD ESVESLRWLL DTFKDAMRGK QPKTVLTDQC 360 MEITDALVAA WPRTTHRICV WHVYQNAMMH LNQVFEGSKT FAHDFGQCIF DCEEEEEFVY 420 AWRAMIDKYD LDDNEWLAKL YEDRLTWALP YGKQVFCADI KSSLQKENLI SLLKKHLSPQ 480 QELLPFFEHY DTLLNERRCL ELQADAHAGQ NILKVPPLRM LKQAANVYTP AVFKLFQNEF 540 EMYMDCMVYH CGDAGTISDY KVIVDEKSRE HFVRYDSSDS SIFCSCKKFE SAGIQCRHVF 600 KVLDYRNIKE LPPRYILKRW RKDAKLGAVT DHHEYPSADS SKSLIANRDN DLCCIFSTLA 660 ARAAKTVESF TFIESQSELL LEQVEHILQT RTFEIPQLTI ASSIQPRNLI ESVVESLNHD 720 NNTDTNVIIS AANGILGF

Sequence ? help Back to Top

Protein Sequence Length: 738 aa Download sequence Send to blast

MEERMGPAKC ESEAETPTHY PTHSLLARNR SASSLHQTLA SLLPVSHLSA PPSLSRFLAC  60
PSPRGISAVF PSLSFSINQA MGVAEHADVP PNPGWIPHLD MQFDNEDAAY AFYNSYAACV  120
GFSVRKSKMW TTSKDVLAAR TLVCSKQGFR QKKKGFEPKK PRPATRTGCP ACMTIKITPS  180
GRYRVTEFVP DHNHLLANPS TARLLRSHRA KVKERIAGDS GMPPDSSDKH QLKRRKAMPV  240
GDAGAVLEYL QRMQVENPSF FYAVRVDGND SIANFFWADA KSVMDYQYFG DVVCFDMTYK  300
ACDCGRPFAL FVGVNNHKQM IIFGSALLYD ESVESLRWLL DTFKDAMRGK QPKTVLTDQC  360
MEITDALVAA WPRTTHRICV WHVYQNAMMH LNQVFEGSKT FAHDFGQCIF DCEEEEEFVY  420
AWRAMIDKYD LDDNEWLAKL YEDRLTWALP YGKQVFCADI KSSLQKENLI SLLKKHLSPQ  480
QELLPFFEHY DTLLNERRCL ELQADAHAGQ NILKVPPLRM LKQAANVYTP AVFKLFQNEF  540
EMYMDCMVYH CGDAGTISDY KVIVDEKSRE HFVRYDSSDS SIFCSCKKFE SAGIQCRHVF  600
KVLDYRNIKE LPPRYILKRW RKDAKLGAVT DHHEYPSADS SKSLIANRDN DLCCIFSTLA  660
ARAAKTVESF TFIESQSELL LEQVEHILQT RTFEIPQLTI ASSIQPRNLI ESVVESLNHD  720
NNTDTNVIIS AANGILGF

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019711301.1	0.0	protein FAR1-RELATED SEQUENCE 5 isoform X2
Refseq	XP_019711307.1	0.0	protein FAR1-RELATED SEQUENCE 5 isoform X2
TrEMBL	A0A2H3ZXM6	0.0	A0A2H3ZXM6_PHODC; protein FAR1-RELATED SEQUENCE 5-like isoform X2
STRING	XP_008805974.1	0.0	(Phoenix dactylifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-111	FAR1-related sequence 5