PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010936439.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family YABBY
Protein Properties Length: 190aa    MW: 21418.8 Da    PI: 8.4976
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010936439.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY55.91.9e-17158158
           YABBY  1 advfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqlla 58
                    +d++s +e++Cyv+C++Cnt+lav vP + l+ +vtv+CGhC +l  ++ + ++q l 
  XP_010936439.1  1 MDLVSPTEHLCYVRCTYCNTVLAVGVPCKRLMDTVTVKCGHCNHLSFLSPRPMVQSLC 58
                    578999************************************9986666555555555 PP
2YABBY96.65.6e-3084144102162
           YABBY 102 senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWah 162
                     s+++++ +p++p v++PPek+ r Psaynrf+keeiqrika+ Pdi hreafs+aaknWa 
  XP_010936439.1  84 STSSEQMIPKAPFVVKPPEKKHRLPSAYNRFMKEEIQRIKAAKPDIPHREAFSMAAKNWAK 144
                     7889999****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.7E-466145IPR006780YABBY protein
SuperFamilySSF470952.88E-895146IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.101.5E-599146IPR009071High mobility group box domain
CDDcd013909.39E-6106147No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010254Biological Processnectary development
GO:0010582Biological Processfloral meristem determinacy
GO:0048479Biological Processstyle development
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MDLVSPTEHL CYVRCTYCNT VLAVGVPCKR LMDTVTVKCG HCNHLSFLSP RPMVQSLCPT  60
DHPMAFQGSC NDCRRGQPLL PPSSTSSEQM IPKAPFVVKP PEKKHRLPSA YNRFMKEEIQ  120
RIKAAKPDIP HREAFSMAAK NWAKCDPRCS TSVSTPENTG AVRTVTLPLE RENSLTVERF  180
DVFEQLERKD
Functional Description ? help Back to Top
Source Description
UniProtRegulates carpel specification in flower development. Severe or intermediate mutation in DL causes complete or partial homeotic conversion of carpels into stamens without affecting the identities of other floral organs. Interacts antagonistically with class B genes and controls floral meristem determinacy. Regulates midrib formation in leaves probably by inducing cell proliferation in the central region of the leaf. {ECO:0000269|PubMed:14729915}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00220DAPTransfer from AT1G69180Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010936439.11e-140protein DROOPING LEAF
SwissprotQ76EJ02e-96YABDL_ORYSJ; Protein DROOPING LEAF
TrEMBLA0A2H3XLR81e-105A0A2H3XLR8_PHODC; protein DROOPING LEAF
STRINGXP_008785629.11e-106(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP59513657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69180.13e-53YABBY family protein