PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010936439.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | YABBY | ||||||||
Protein Properties | Length: 190aa MW: 21418.8 Da PI: 8.4976 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 55.9 | 1.9e-17 | 1 | 58 | 1 | 58 |
YABBY 1 advfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqlla 58 +d++s +e++Cyv+C++Cnt+lav vP + l+ +vtv+CGhC +l ++ + ++q l XP_010936439.1 1 MDLVSPTEHLCYVRCTYCNTVLAVGVPCKRLMDTVTVKCGHCNHLSFLSPRPMVQSLC 58 578999************************************9986666555555555 PP | |||||||
2 | YABBY | 96.6 | 5.6e-30 | 84 | 144 | 102 | 162 |
YABBY 102 senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWah 162 s+++++ +p++p v++PPek+ r Psaynrf+keeiqrika+ Pdi hreafs+aaknWa XP_010936439.1 84 STSSEQMIPKAPFVVKPPEKKHRLPSAYNRFMKEEIQRIKAAKPDIPHREAFSMAAKNWAK 144 7889999****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 1.7E-46 | 6 | 145 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 2.88E-8 | 95 | 146 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 1.5E-5 | 99 | 146 | IPR009071 | High mobility group box domain |
CDD | cd01390 | 9.39E-6 | 106 | 147 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010254 | Biological Process | nectary development | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0048479 | Biological Process | style development |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MDLVSPTEHL CYVRCTYCNT VLAVGVPCKR LMDTVTVKCG HCNHLSFLSP RPMVQSLCPT 60 DHPMAFQGSC NDCRRGQPLL PPSSTSSEQM IPKAPFVVKP PEKKHRLPSA YNRFMKEEIQ 120 RIKAAKPDIP HREAFSMAAK NWAKCDPRCS TSVSTPENTG AVRTVTLPLE RENSLTVERF 180 DVFEQLERKD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Regulates carpel specification in flower development. Severe or intermediate mutation in DL causes complete or partial homeotic conversion of carpels into stamens without affecting the identities of other floral organs. Interacts antagonistically with class B genes and controls floral meristem determinacy. Regulates midrib formation in leaves probably by inducing cell proliferation in the central region of the leaf. {ECO:0000269|PubMed:14729915}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00220 | DAP | Transfer from AT1G69180 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010936439.1 | 1e-140 | protein DROOPING LEAF | ||||
Swissprot | Q76EJ0 | 2e-96 | YABDL_ORYSJ; Protein DROOPING LEAF | ||||
TrEMBL | A0A2H3XLR8 | 1e-105 | A0A2H3XLR8_PHODC; protein DROOPING LEAF | ||||
STRING | XP_008785629.1 | 1e-106 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5951 | 36 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69180.1 | 3e-53 | YABBY family protein |