PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010936245.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | bHLH | ||||||||
Protein Properties | Length: 342aa MW: 37748.9 Da PI: 7.5017 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.3 | 1.2e-12 | 166 | 212 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++Er+RR+++ ++f L ++P + kK++Ka++L A++Y+k+Lq XP_010936245.1 166 DHIIAERKRREKLSQRFIALSAIIPGL-----KKMDKASVLGDAIKYLKQLQ 212 699************************.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.186 | 162 | 211 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.23E-17 | 165 | 228 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.3E-17 | 166 | 224 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.8E-10 | 166 | 212 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.64E-13 | 167 | 216 | No hit | No description |
SMART | SM00353 | 1.3E-14 | 168 | 217 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 342 aa Download sequence Send to blast |
MQGMEDPSFF HHWDMNSLDQ LTAQQLAVAL GQDFQQSLSS ESNTSYPSFQ PPASTTSNTF 60 SCSSMDTKCV ERPKKILKAS SWNSCTTEQN SALAPDASSP SILSFGNLDS PRNQAELYER 120 LVGAVRPKEE MEILIPPGSK RSYDNMVGQG PKRMNMGARP SSHNQDHIIA ERKRREKLSQ 180 RFIALSAIIP GLKKMDKASV LGDAIKYLKQ LQEKVKSLEE QNAKRTVESA VLVKKSQLSS 240 DDDGSYDENF GGQPSGESLP EIGAKMSEKS VLIKIHCEKS KGILVKALCE IEKLHLTVIN 300 TSVIPFASSL LDITVVAQVD EEFSMTVKEL VKKLNSAFKQ FA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 1e-14 | 166 | 215 | 8 | 57 | Transcription factor MYC2 |
5gnj_B | 1e-14 | 166 | 215 | 8 | 57 | Transcription factor MYC2 |
5gnj_E | 1e-14 | 166 | 215 | 8 | 57 | Transcription factor MYC2 |
5gnj_F | 1e-14 | 166 | 215 | 8 | 57 | Transcription factor MYC2 |
5gnj_G | 1e-14 | 166 | 215 | 8 | 57 | Transcription factor MYC2 |
5gnj_I | 1e-14 | 166 | 215 | 8 | 57 | Transcription factor MYC2 |
5gnj_M | 1e-14 | 166 | 215 | 8 | 57 | Transcription factor MYC2 |
5gnj_N | 1e-14 | 166 | 215 | 8 | 57 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 170 | 175 | ERKRRE |
2 | 171 | 176 | RKRREK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010936244.1 | 0.0 | transcription factor bHLH18 | ||||
TrEMBL | A0A2H3XY29 | 0.0 | A0A2H3XY29_PHODC; transcription factor bHLH18-like | ||||
STRING | XP_008790398.1 | 0.0 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37850.1 | 3e-64 | bHLH family protein |