PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010936103.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | bHLH | ||||||||
Protein Properties | Length: 276aa MW: 29107.9 Da PI: 6.5366 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 26.1 | 1.5e-08 | 126 | 170 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h+++Er RR+ri +++ L+el+P+ K + a++L + +Y+k L XP_010936103.1 126 HSIAERLRRERIAERMRALQELVPNT-----NKTDRAAMLDEILDYVKFL 170 99***********************7.....5***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 8.81E-10 | 119 | 175 | No hit | No description |
SuperFamily | SSF47459 | 5.5E-15 | 119 | 180 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.77 | 121 | 170 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.6E-14 | 123 | 181 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.2E-6 | 126 | 170 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.2E-9 | 127 | 176 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 276 aa Download sequence Send to blast |
MANAPPPPQD GIGDDFFEQI FSMPPPYAGG DGGGSGGGLA GGGEGGMPPG MVLSREGGSG 60 AGGTSGFPLG LSLERGSGSG KRLREETEAK ATFHGQVKQG GVAAGPQPPA PRPKVRARRG 120 QATDPHSIAE RLRRERIAER MRALQELVPN TNKTDRAAML DEILDYVKFL RLQVKVLSMS 180 RLGGAGAVAQ LVADIPLPVE GEASESGRKQ QVWEKWSTDG TERQVAKLME EDIGAAMQFL 240 QSKALCMMPI SLAMAIYDTH NQPEGHTVKP EPNASS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 130 | 135 | RLRRER |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required for ovule fertilization. {ECO:0000269|PubMed:15634699}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010936103.1 | 0.0 | transcription factor UNE12 isoform X3 | ||||
Swissprot | O22768 | 5e-84 | UNE12_ARATH; Transcription factor UNE12 | ||||
TrEMBL | A0A2H3XMN7 | 1e-151 | A0A2H3XMN7_PHODC; transcription factor UNE12-like | ||||
STRING | XP_008786084.1 | 1e-150 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G02590.3 | 2e-55 | bHLH family protein |
Publications ? help Back to Top | |||
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