PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010936103.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family bHLH
Protein Properties Length: 276aa    MW: 29107.9 Da    PI: 6.5366
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010936103.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.11.5e-08126170554
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     h+++Er RR+ri +++  L+el+P+       K + a++L +  +Y+k L
  XP_010936103.1 126 HSIAERLRRERIAERMRALQELVPNT-----NKTDRAAMLDEILDYVKFL 170
                     99***********************7.....5***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000838.81E-10119175No hitNo description
SuperFamilySSF474595.5E-15119180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.77121170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-14123181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.2E-6126170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-9127176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MANAPPPPQD GIGDDFFEQI FSMPPPYAGG DGGGSGGGLA GGGEGGMPPG MVLSREGGSG  60
AGGTSGFPLG LSLERGSGSG KRLREETEAK ATFHGQVKQG GVAAGPQPPA PRPKVRARRG  120
QATDPHSIAE RLRRERIAER MRALQELVPN TNKTDRAAML DEILDYVKFL RLQVKVLSMS  180
RLGGAGAVAQ LVADIPLPVE GEASESGRKQ QVWEKWSTDG TERQVAKLME EDIGAAMQFL  240
QSKALCMMPI SLAMAIYDTH NQPEGHTVKP EPNASS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1130135RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010936103.10.0transcription factor UNE12 isoform X3
SwissprotO227685e-84UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A2H3XMN71e-151A0A2H3XMN7_PHODC; transcription factor UNE12-like
STRINGXP_008786084.11e-150(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.32e-55bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]