PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

bHLH

Protein Properties

Length: 310aa MW: 32817.1 Da PI: 6.8079

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010936096.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	25.9	1.8e-08	160	204	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h+++Er RR+ri +++ L+el+P+ K + a++L + +Y+k L XP_010936096.1 160 HSIAERLRRERIAERMRALQELVPNT-----NKTDRAAMLDEILDYVKFL 204 99*********************7.....5*************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	9.73E-10	153	209	No hit	No description
SuperFamily	SSF47459	6.8E-15	153	214	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.77	155	204	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.2E-14	157	215	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.5E-6	160	204	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.2E-9	161	210	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence Send to blast
MANAPPPPQD GIGDDFFEQI FSMPPPYAGG DGGGSGGGLA GGGEGGMPPG MVLSREGGSG 60 AGGTSGFPLG LSLERGSGSG KRLREETEAK AERDPVQLAG LFPPGFGHLQ SHQIRPNPPT 120 PTPPQTFHGQ VKQGGVAAGP QPPAPRPKVR ARRGQATDPH SIAERLRRER IAERMRALQE 180 LVPNTNKTDR AAMLDEILDY VKFLRLQVKV LSMSRLGGAG AVAQLVADIP LPVEGEASES 240 GRKQQVWEKW STDGTERQVA KLMEEDIGAA MQFLQSKALC MMPISLAMAI YDTHNQPEGH 300 TVKPEPNASS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	164	169	RLRRER

Functional Description ? help Back to Top
Source	Description
UniProt	Required for ovule fertilization. {ECO:0000269\|PubMed:15634699}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010936096.1	0.0	transcription factor UNE12 isoform X1
Swissprot	O22768	5e-79	UNE12_ARATH; Transcription factor UNE12
TrEMBL	A0A2H3XMN7	1e-173	A0A2H3XMN7_PHODC; transcription factor UNE12-like
STRING	XP_008786084.1	1e-173	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2656	35	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02590.3	8e-55	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]