PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010936096.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family bHLH
Protein Properties Length: 310aa    MW: 32817.1 Da    PI: 6.8079
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010936096.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.91.8e-08160204554
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     h+++Er RR+ri +++  L+el+P+       K + a++L +  +Y+k L
  XP_010936096.1 160 HSIAERLRRERIAERMRALQELVPNT-----NKTDRAAMLDEILDYVKFL 204
                     99***********************7.....5***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000839.73E-10153209No hitNo description
SuperFamilySSF474596.8E-15153214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.77155204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-14157215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.5E-6160204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-9161210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MANAPPPPQD GIGDDFFEQI FSMPPPYAGG DGGGSGGGLA GGGEGGMPPG MVLSREGGSG  60
AGGTSGFPLG LSLERGSGSG KRLREETEAK AERDPVQLAG LFPPGFGHLQ SHQIRPNPPT  120
PTPPQTFHGQ VKQGGVAAGP QPPAPRPKVR ARRGQATDPH SIAERLRRER IAERMRALQE  180
LVPNTNKTDR AAMLDEILDY VKFLRLQVKV LSMSRLGGAG AVAQLVADIP LPVEGEASES  240
GRKQQVWEKW STDGTERQVA KLMEEDIGAA MQFLQSKALC MMPISLAMAI YDTHNQPEGH  300
TVKPEPNASS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1164169RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010936096.10.0transcription factor UNE12 isoform X1
SwissprotO227685e-79UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A2H3XMN71e-173A0A2H3XMN7_PHODC; transcription factor UNE12-like
STRINGXP_008786084.11e-173(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26563580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.38e-55bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]