PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010936085.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family bHLH
Protein Properties Length: 409aa    MW: 43553.2 Da    PI: 5.306
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010936085.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH54.62e-17193239455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      hn +ErrRRdriN+++ +L+el+P +      K +Ka++L +A+eY+ksLq
  XP_010936085.1 193 VHNLAERRRRDRINEKMKTLQELIPRC-----NKSDKASTLDEAIEYLKSLQ 239
                     6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.49E-20187251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.279189238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.46E-18192243No hitNo description
PfamPF000107.4E-15193239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-20193247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-18195244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MFCVPDLDLP LRHTSPALLE NELPGLISNK GPVTHGDPVP ETSLPDQPTA EAGEMGSSAV  60
AEAVRQLFME EDDIASWIHY QIGEDGGGDM YRELLAAATG ETTADLGDAK KRMVEGFTVA  120
ESSEMPAVEG QAAVLMGLRR GPVRSHAGDG RKRKAREGDN SGCQNEDDEF ESGDKRKDTH  180
RSAPVRRSRA AEVHNLAERR RRDRINEKMK TLQELIPRCN KSDKASTLDE AIEYLKSLQL  240
QVQMMSAGCS MGPVMFPGVQ TYPPPMGIGM GIGVGVGAGV GTGAKMGAVM GAGDSGRPLL  300
QYGSFLPCPH MAAPVPAQFS PRLFVPSFLS PTMATADQMG VEAPGQRVPT SSNSVGMQGA  360
KMVQIPRIGD PYGPFVGLHH LQGSSQSCVV DQPGTSKTRT DDAENNILG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1197202ERRRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010936085.10.0transcription factor PIF1 isoform X2
TrEMBLA0A2H3XVY41e-144A0A2H3XVY4_PHODC; transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15
STRINGXP_008796446.10.0(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.14e-35phytochrome interacting factor 3-like 5