PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010936085.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | bHLH | ||||||||
Protein Properties | Length: 409aa MW: 43553.2 Da PI: 5.306 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 54.6 | 2e-17 | 193 | 239 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn +ErrRRdriN+++ +L+el+P + K +Ka++L +A+eY+ksLq XP_010936085.1 193 VHNLAERRRRDRINEKMKTLQELIPRC-----NKSDKASTLDEAIEYLKSLQ 239 6*************************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.49E-20 | 187 | 251 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 18.279 | 189 | 238 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 9.46E-18 | 192 | 243 | No hit | No description |
Pfam | PF00010 | 7.4E-15 | 193 | 239 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.1E-20 | 193 | 247 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.2E-18 | 195 | 244 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 409 aa Download sequence Send to blast |
MFCVPDLDLP LRHTSPALLE NELPGLISNK GPVTHGDPVP ETSLPDQPTA EAGEMGSSAV 60 AEAVRQLFME EDDIASWIHY QIGEDGGGDM YRELLAAATG ETTADLGDAK KRMVEGFTVA 120 ESSEMPAVEG QAAVLMGLRR GPVRSHAGDG RKRKAREGDN SGCQNEDDEF ESGDKRKDTH 180 RSAPVRRSRA AEVHNLAERR RRDRINEKMK TLQELIPRCN KSDKASTLDE AIEYLKSLQL 240 QVQMMSAGCS MGPVMFPGVQ TYPPPMGIGM GIGVGVGAGV GTGAKMGAVM GAGDSGRPLL 300 QYGSFLPCPH MAAPVPAQFS PRLFVPSFLS PTMATADQMG VEAPGQRVPT SSNSVGMQGA 360 KMVQIPRIGD PYGPFVGLHH LQGSSQSCVV DQPGTSKTRT DDAENNILG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 197 | 202 | ERRRRD |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010936085.1 | 0.0 | transcription factor PIF1 isoform X2 | ||||
TrEMBL | A0A2H3XVY4 | 1e-144 | A0A2H3XVY4_PHODC; transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15 | ||||
STRING | XP_008796446.1 | 0.0 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20180.1 | 4e-35 | phytochrome interacting factor 3-like 5 |