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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010935880.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | ERF | ||||||||
Protein Properties | Length: 204aa MW: 22547.4 Da PI: 10.1852 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55 | 2e-17 | 128 | 178 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.kr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +g+++AeIrd +r +r++lg+f taeeAa a+++a+ k++g XP_010935880.1 128 HYRGVRERP-WGKFAAEIRD----SaRRgARVWLGTFETAEEAALAYDRAAYKMRG 178 7*****888.**********....33235*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 5.6E-31 | 127 | 187 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.3E-13 | 128 | 178 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.3E-35 | 128 | 192 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.43E-29 | 128 | 186 | No hit | No description |
PROSITE profile | PS51032 | 23.657 | 128 | 186 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.03E-22 | 128 | 187 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 3.7E-11 | 129 | 140 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.7E-11 | 152 | 168 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MPPNVLKEKK KKKREDKKET PMEPALDPIR LHLLPENRSQ PSHPCPPNSS TLTDAPAKRR 60 RSDGSDSADG RSVDALSSGR PLKEPVISDG GSSPRLPLDE NDSDDMVLYG ILRETLEPPV 120 VGERKRRHYR GVRERPWGKF AAEIRDSARR GARVWLGTFE TAEEAALAYD RAAYKMRGSR 180 ALLNFPLARG AESSSDGSKP ALPG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-33 | 125 | 187 | 2 | 64 | ATERF1 |
3gcc_A | 3e-33 | 125 | 187 | 2 | 64 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 8 | 17 | KKKKKREDKK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010935880.2 | 1e-144 | ethylene-responsive transcription factor CRF1 | ||||
TrEMBL | A0A2H3YXA3 | 8e-89 | A0A2H3YXA3_PHODC; pathogenesis-related genes transcriptional activator PTI5-like | ||||
STRING | XP_008805207.1 | 1e-89 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP103 | 37 | 465 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47220.1 | 2e-28 | ethylene responsive element binding factor 2 |