PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010935868.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C2H2
Protein Properties Length: 403aa    MW: 44077 Da    PI: 9.0996
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010935868.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.23.4e-06229251123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     + C+ Cgk F+r  n + H+r H
  XP_010935868.1 229 HYCQVCGKGFKRDANVRMHMRAH 251
                     68*******************99 PP
2zf-C2H211.10.0012325348123
                     EEETTTT.EEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCg.ksFsrksnLkrHirtH 23 
                     y+C+ C+ k Fs  s+L++H + +
  XP_010935868.1 325 YVCNRCNqKQFSVLSDLRTHEKHC 348
                     9*******************9876 PP
3zf-C2H214.20.00013357372621
                     TTEEESSHHHHHHHHH CS
         zf-C2H2   6 CgksFsrksnLkrHir 21 
                     Cg++Fsrk+ L++Hi 
  XP_010935868.1 357 CGTTFSRKDKLMSHIA 372
                     **************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.5E-5227254No hitNo description
SMARTSM003550.022229251IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.946229256IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.5E-5229256IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280231251IPR007087Zinc finger, C2H2
SMARTSM0035569287320IPR015880Zinc finger, C2H2-like
SMARTSM0035522325347IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MIPERTPLIP GGTPFFQSND PRGFQMSNDP QGFQMYEGIE SSIPSSSAGL TSGAGTYSQT  60
LLYSFSLLRD KVQEVQSLVT LVVSSDPIQQ QQSVAVAASG AGAIIQEIIT AASSMMYAFQ  120
QVAVGAVPAN TGHGSVSHPH GMKASYDGTS RGNGVDDIAH VLNDFEGGRI GIVGAVTHHR  180
TNTTLNPFDG AEYGHRNKDS SNKLKSPSST TAGDIIELDA GILLAKYTHY CQVCGKGFKR  240
DANVRMHMRA HGDEYKTNAA LSNPMKGGGD GSMRHKEDPP FGLPRKYSCP QEGCRWNKKH  300
AKFQPLKSII CVKNHYKRTH CPKMYVCNRC NQKQFSVLSD LRTHEKHCGD LKWMCSCGTT  360
FSRKDKLMSH IALFVGHTPV MNCLPKQQGN LKYQAMQVQM DGR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00522DAPTransfer from AT5G22890Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010935868.20.0protein SENSITIVE TO PROTON RHIZOTOXICITY 2
SwissprotQ0WT241e-106STOP2_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2
TrEMBLA0A2H3XRL30.0A0A2H3XRL3_PHODC; protein SENSITIVE TO PROTON RHIZOTOXICITY 2-like
STRINGXP_008787557.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74413251
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.11e-101C2H2 family protein