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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010935491.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | bHLH | ||||||||
Protein Properties | Length: 230aa MW: 25517.1 Da PI: 6.9171 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 30.2 | 8.1e-10 | 67 | 114 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ rE+ RRd++N++f eL ++l + + +K +K++iL A + + +L XP_010935491.1 67 SKACREKMRRDKLNDRFLELSSILDPG---RPPKFEKSSILSDAARLLVQL 114 6789**********************8...89***********99877665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.465 | 63 | 114 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.26E-6 | 66 | 119 | No hit | No description |
SuperFamily | SSF47459 | 4.06E-12 | 67 | 131 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.2E-7 | 67 | 114 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.3E-11 | 68 | 136 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.3E-6 | 69 | 120 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MGSNAIEDYW IDAGGSDGEL RCALESFCEM APTAGVGIEE AYRDVCGLEQ TSSRKRIRDE 60 SCAGPKSKAC REKMRRDKLN DRFLELSSIL DPGRPPKFEK SSILSDAARL LVQLRSEAQQ 120 LKESNEKLQE AIKDLKVEKN ELREEKMKLK ADKERLDQQV KAMSVPPAGF MPHPIAFHPA 180 TATAAFAPHG HTPANKVAPF TAFPGVAMWQ WLPPAVVDTT QDTKLWPPNA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Plays a role in resistance to amide-linked indole-3-acetic acid (IAA) conjugates such as IAA-Leu and IAA-Phe. May regulate gene expression in response to metal homeostasis changes. {ECO:0000269|PubMed:17028341}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010935491.1 | 1e-171 | transcription factor bHLH115 | ||||
Swissprot | Q9FH37 | 1e-64 | ILR3_ARATH; Transcription factor ILR3 | ||||
TrEMBL | A0A2H3YUH3 | 1e-148 | A0A2H3YUH3_PHODC; transcription factor bHLH115-like | ||||
STRING | XP_008803703.1 | 1e-149 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8173 | 36 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51070.1 | 6e-60 | bHLH family protein |