PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010935437.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | WRKY | ||||||||
Protein Properties | Length: 206aa MW: 22444.9 Da PI: 6.7771 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 100.1 | 1.4e-31 | 120 | 178 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 l+Dg++WrKYG+K+vk+s++pr+YYrC+++gCpvkk+ver++edp++v++tYeg Hnh XP_010935437.1 120 LNDGFKWRKYGKKSVKNSPNPRNYYRCSTEGCPVKKRVERDKEDPSYVITTYEGIHNHM 178 58********************************************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.2E-33 | 107 | 180 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.58E-28 | 112 | 179 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.031 | 115 | 180 | IPR003657 | WRKY domain |
SMART | SM00774 | 8.9E-36 | 120 | 179 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.7E-25 | 121 | 177 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
MAAVGAPLHA LANMAYFPSQ TGQGSDLTYD DLQSDQSAAF DLSDYILFEE GLAPASFGQP 60 VNAVSPMVDA DQTASQISGS NLTTISSSSS STRRSGVLER LRVAEGSRIA FRTKSEVEIL 120 NDGFKWRKYG KKSVKNSPNP RNYYRCSTEG CPVKKRVERD KEDPSYVITT YEGIHNHMSP 180 GVVYYTTKDT ASGRFYVAGC ELPPGS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 6e-28 | 107 | 181 | 1 | 76 | WRKY transcription factor 1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010935437.1 | 1e-153 | probable WRKY transcription factor 50 | ||||
TrEMBL | A0A2H3ZDW2 | 1e-110 | A0A2H3ZDW2_PHODC; probable WRKY transcription factor 50 | ||||
STRING | XP_008812294.1 | 1e-110 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP441 | 37 | 206 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26170.1 | 2e-42 | WRKY DNA-binding protein 50 |