PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010935405.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

C2H2

Protein Properties

Length: 278aa MW: 30113.2 Da PI: 8.4035

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010935405.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.3	0.00052	90	109	2	21
EETTTTEEESSHHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHir 21 Cp C k F ++ L+ H+r XP_010935405.1 90 HCPVCRKEFANPKALHGHMR 109 5******************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	9.0E-4	88	111	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	4.21E-8	88	111	No hit	No description
PROSITE profile	PS50157	9.12	89	111	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.01	89	111	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	3.6E-4	90	113	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	91	111	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	4.21E-8	145	172	No hit	No description
PROSITE profile	PS50157	10.699	150	177	IPR007087	Zinc finger, C2H2
Pfam	PF13912	3.6E-7	150	174	IPR007087	Zinc finger, C2H2
SMART	SM00355	12	150	172	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	152	172	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence Send to blast
MSASHPSLPP FGLSAGAGAL GGDGGDDDPR RSHLPLTHAV DANPAFPDEE ENPDDPYPND 60 GNNHDPTSAA FAGGAQWRKR KRAGIIPPLH CPVCRKEFAN PKALHGHMRC HPDRSWRGIT 120 PPTLRPESEK EVAASLVRLS GSENAWAKRY WCSRCGRDFD TRQALGGHRA SHRSVKGCHA 180 RSKYEGRNGN GDHGVRNGRP GGHVGKGGVQ AKTGQRRRRG RWKTSAAEEE GAETAEEVAE 240 RRGLLLDLNL PAPPEEKNDD SSSGIIDLNK KLPGHDDE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	XP_008781368.1	1e-136	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13010	27	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17180.1	1e-19	C2H2-like zinc finger protein