PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010935334.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB_related
Protein Properties Length: 510aa    MW: 55717.5 Da    PI: 6.6398
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010935334.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.26.6e-1760104147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r rWT+eE+e++++a k++G   W++I +++g ++t+ q++s+ qk+
   XP_010935334.1  60 RERWTEEEHEKFLEALKLYGRA-WRRIEEHIG-TKTAVQIRSHAQKF 104
                      78******************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.87E-1654108IPR009057Homeodomain-like
PROSITE profilePS5129421.91755109IPR017930Myb domain
TIGRFAMsTIGR015575.8E-1758107IPR006447Myb domain, plants
SMARTSM007171.7E-1359107IPR001005SANT/Myb domain
PfamPF002496.6E-1460103IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.7E-1060100IPR009057Homeodomain-like
CDDcd001671.05E-1062105No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009845Biological Processseed germination
GO:0009909Biological Processregulation of flower development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    Send to blast
MDVQDKSGRP SLNPLQIPDR RMCMDISTSS AIGHQLKESG SSGDEHAIKV RKPYTITKQR  60
ERWTEEEHEK FLEALKLYGR AWRRIEEHIG TKTAVQIRSH AQKFFSKVVR EPGTAKAIEI  120
PPPRPKRKPL HPYPRKLGNS PSKGLPVMEQ PEWSSLPVPS VFEPENGSPV SVLSAVGSDT  180
TGSTASNPTH GCTSPALSAA RSDLVGTLLT EQENGCQSPT PSVQDENRST SPGPASTCLV  240
TEDKSQMEVD LSSKDETPKE GSQMEVQATC LKLFGRTVLV TDAQKPCSSG VGNMVQSHKS  300
LPAVESSSHA VSTDVDLQTP TKPGLQTPDQ GDFWGGPGKS ARSPFNGGSF PMFYCLSPHG  360
DLTNSTEAAC PPPWWWAFYG TQPTLPFINP QNMNPVQIMP LTCIEASDEK DSQKEGSWTD  420
LNTFACRAGT GDKNSDDVDS QQGVEHLKEP APTLRLEPSE NSAFVCLKIN TAKSPRAFVP  480
YKRCLAEKQA KQHSQMVNEE RDGQAIRLCL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010935334.10.0protein CCA1
TrEMBLA0A2H3YWF10.0A0A2H3YWF1_PHODC; protein REVEILLE 7-like isoform X1
STRINGXP_008804812.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP77833647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37260.18e-42MYB_related family protein