PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010935028.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

bHLH

Protein Properties

Length: 641aa MW: 69906.5 Da PI: 6.1755

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010935028.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37	5.9e-12	461	505	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h e+Er+RR+++N++f Lr +P+ K++Ka+ L A+ YI++L XP_010935028.1 461 HVEAERQRREKLNQRFYALRAEVPNV-----SKMDKASLLADAISYIREL 505 899********************6.....5**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	3.3E-56	42	221	IPR025610	Transcription factor MYC/MYB N-terminal
PROSITE profile	PS50888	16.882	456	505	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.44E-17	459	528	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.9E-9	461	505	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.25E-15	461	510	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.7E-17	461	526	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.7E-16	462	511	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 641 aa Download sequence Send to blast
MNLWTDDTSS MMEAFVASSS DLPYFQWPQP LPPPPYLSHE SLQHRLQTLI EGARDSWTYA 60 IFWQSSADAA SGAALLGWGD GYYKGFQEDK RTRRAAASGS EQEHRKRVLR ELNCLISSGA 120 APDDAVEEEV TDMEWFFLVS MTQSFIAGVG LPGQALLSGA PVWIAGGDRM AAAQCDRARQ 180 AHAFGLQTMA CIPVGSGVLE LGSTERIFQS FEMVAKVRAF FSFGGRETAA IGSWSLPPPI 240 QTAAETDPSV LWISDPIAPA PPAPEIPVSK PPSQFENPNS SSLTENPSPF PIPQRSSPPP 300 PPPQSSSTNP HTQSFLDVSL SESGLKAFPS APTCKPETCD FSNYGESKRN PSTVAANGGF 360 FFHHSISTEN KNKKSTGATS KGSNNEGMLS FSSAATAVAA ADWSRPASGG CTTGLLAGDS 420 DHSDLEASVR EVESSRVAEP EKRPRKRGRK PANGREEPLD HVEAERQRRE KLNQRFYALR 480 AEVPNVSKMD KASLLADAIS YIRELRSKLQ SLELDREGLH SQIDVLKKER DLTLARPSPP 540 LDNDLKAVVN GGSRCHGVEV EVKILGREAM IRVHCNKRYH PAARLMMALK ELDLEVSYAS 600 VSVVNDLMIQ QATVNMLSRS YTQEQLTAAL FARITEPPTL H

Sequence ? help Back to Top

Protein Sequence Length: 641 aa Download sequence Send to blast

MNLWTDDTSS MMEAFVASSS DLPYFQWPQP LPPPPYLSHE SLQHRLQTLI EGARDSWTYA  60
IFWQSSADAA SGAALLGWGD GYYKGFQEDK RTRRAAASGS EQEHRKRVLR ELNCLISSGA  120
APDDAVEEEV TDMEWFFLVS MTQSFIAGVG LPGQALLSGA PVWIAGGDRM AAAQCDRARQ  180
AHAFGLQTMA CIPVGSGVLE LGSTERIFQS FEMVAKVRAF FSFGGRETAA IGSWSLPPPI  240
QTAAETDPSV LWISDPIAPA PPAPEIPVSK PPSQFENPNS SSLTENPSPF PIPQRSSPPP  300
PPPQSSSTNP HTQSFLDVSL SESGLKAFPS APTCKPETCD FSNYGESKRN PSTVAANGGF  360
FFHHSISTEN KNKKSTGATS KGSNNEGMLS FSSAATAVAA ADWSRPASGG CTTGLLAGDS  420
DHSDLEASVR EVESSRVAEP EKRPRKRGRK PANGREEPLD HVEAERQRRE KLNQRFYALR  480
AEVPNVSKMD KASLLADAIS YIRELRSKLQ SLELDREGLH SQIDVLKKER DLTLARPSPP  540
LDNDLKAVVN GGSRCHGVEV EVKILGREAM IRVHCNKRYH PAARLMMALK ELDLEVSYAS  600
VSVVNDLMIQ QATVNMLSRS YTQEQLTAAL FARITEPPTL H

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4rru_A	2e-58	6	217	12	227	Transcription factor MYC3
4ywc_A	2e-58	6	217	12	227	Transcription factor MYC3
4ywc_B	2e-58	6	217	12	227	Transcription factor MYC3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	441	449	KRPRKRGRK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in jasmonate (JA) signaling pathway during spikelet development. Binds to the G2 region G-box (5'-CACGTG-3') of the MADS1 promoter and thus directly regulates the expression of MADS1. Its function in MADS1 activation is abolished by TIFY3/JAZ1 which directly target MYC2 during spikelet development. {ECO:0000269\|PubMed:24647160}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010935028.1	0.0	transcription factor MYC2
Swissprot	Q336P5	0.0	MYC2_ORYSJ; Transcription factor MYC2
TrEMBL	A0A2H3ZNW1	0.0	A0A2H3ZNW1_PHODC; LOW QUALITY PROTEIN: transcription factor MYC2-like
STRING	XP_008799392.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4452	31	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32640.1	1e-137	bHLH family protein

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992] Cai Q, et al. Jasmonic acid regulates spikelet development in rice. Nat Commun, 2014. 5: p. 3476 [PMID:24647160]