PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

XP_010934970.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

GRAS

Protein Properties

Length: 781aa MW: 82641.8 Da PI: 6.6281

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010934970.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	304.2	3.1e-93	416	780	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 l+e+L+++Ae v++g++ a+ +Larl+++ sp g+p+ R a+yf+eAL+ + ++ + p+ +++ +++ +l +k+fs+vsP+l+f+ XP_010934970.1 416 LIEQLFKVAELVEAGNTVSARGILARLNQQlPSPVGKPLLRSAFYFKEALHLLTSP---TVPNHPPSPLATPFDVVLKLGTVKAFSDVSPVLQFT 507 6799**********************998***************987666...66666677777778899*************** PP GRAS 95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184 ++t qa+le++ + r+H++Dfdi+ G+QW a++q+La+R+ + +psl+iT+++s+ s+++ el+ t+e+L++fA+ l++pfef + + XP_010934970.1 508 NFTSVQALLEELRAAPRIHVVDFDIGVGGQWSAFMQELAQRRctaagAASPSLKITAFASSCSHHSLELHLTRENLSHFAADLNIPFEFIL---H 599 *************************************999877779******9999*********************98...4 PP GRAS 185 rledleleeL.rvkp...gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleakl 275 +l+ ++++ L ++++ +Ea++Vnl + + + + +++L+lvk+lsPk+v+ v++ +d+++ +F+++f++a++ y++l+ds++a XP_010934970.1 600 SLNPFDPSPLlSLSSagaDEAIVVNLPVGSFVHP--------PVPTLLRLVKQLSPKIVISVDHCSDRSDLPFAQHFAHAFQSYTVLLDSIDAA- 685 566666665533333458******999998........6678*****************************************998. PP GRAS 276 preseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsv 370 +++ e ++k+Er+l++++i+n+v ++++ ++ Wr+ +++aGF pv++s++a++qa++ll++v+ +g++ve++++sl l+W++ +Lvsv XP_010934970.1 686 GTNLESANKIERFLVQPRIENAVLGRHRN----ADKMLPWRALFNSAGFVPVQFSNFAETQAECLLKRVQARGFHVEKRQASLSLCWQRMELVSV 776 6777****************99998....88899***************************************************** PP GRAS 371 SaWr 374 SaWr XP_010934970.1 777 SAWR 780 *8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	44.158	390	760	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.1E-90	416	780	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007623	Biological Process	circadian rhythm
GO:0048768	Biological Process	root hair cell tip growth
GO:0051301	Biological Process	cell division

Sequence ? help Back to Top
Protein Sequence Length: 781 aa Download sequence Send to blast
MRGMPFSLQE EGALEVLIAG EEKKSLFWGS GGGCGNNKRR KGQPEGSEPR SVLDNRRSPS 60 PPTSTSTLSS SLGGGGGASS DTAGVAAVSD NPGPRKWPPT AAAPASASAT IPSVEEARKE 120 EWAAELQPIP AAALESGGGK CGGVGLGAVE DWEAMLSESA VSPGQEQTFL RWIMGDIDDA 180 AGLKHQLIPP PELDCGSSSA GTFGLVDPGF GLDPIGGLGG GAMASISSSN PSPMASSAAS 240 AGGFGPISSS SSVKVPTFGV ANPPNTATVF PPVPANSLPL PLSLPPGVFY QEPVEEKPVL 300 FGPGFLLSQH QQAQAPQNPA FFLPLPHFDA QPPAHLLPSQ AKRHHPLSVD QMAPKSPFAD 360 SPGPEFFLRR GQSQPQPFPP LNVAPFHLPQ RSKVASGGEA AATAAAAAQQ QQQQALIEQL 420 FKVAELVEAG NTVSARGILA RLNQQLPSPV GKPLLRSAFY FKEALHLLTS PTVPNHPPSP 480 LATPFDVVLK LGTVKAFSDV SPVLQFTNFT SVQALLEELR AAPRIHVVDF DIGVGGQWSA 540 FMQELAQRRC TAAGAASPSL KITAFASSCS HHSLELHLTR ENLSHFAADL NIPFEFILHS 600 LNPFDPSPLL SLSSAGADEA IVVNLPVGSF VHPPVPTLLR LVKQLSPKIV ISVDHCSDRS 660 DLPFAQHFAH AFQSYTVLLD SIDAAGTNLE SANKIERFLV QPRIENAVLG RHRNADKMLP 720 WRALFNSAGF VPVQFSNFAE TQAECLLKRV QARGFHVEKR QASLSLCWQR MELVSVSAWR 780 C

Sequence ? help Back to Top

Protein Sequence Length: 781 aa Download sequence Send to blast

MRGMPFSLQE EGALEVLIAG EEKKSLFWGS GGGCGNNKRR KGQPEGSEPR SVLDNRRSPS  60
PPTSTSTLSS SLGGGGGASS DTAGVAAVSD NPGPRKWPPT AAAPASASAT IPSVEEARKE  120
EWAAELQPIP AAALESGGGK CGGVGLGAVE DWEAMLSESA VSPGQEQTFL RWIMGDIDDA  180
AGLKHQLIPP PELDCGSSSA GTFGLVDPGF GLDPIGGLGG GAMASISSSN PSPMASSAAS  240
AGGFGPISSS SSVKVPTFGV ANPPNTATVF PPVPANSLPL PLSLPPGVFY QEPVEEKPVL  300
FGPGFLLSQH QQAQAPQNPA FFLPLPHFDA QPPAHLLPSQ AKRHHPLSVD QMAPKSPFAD  360
SPGPEFFLRR GQSQPQPFPP LNVAPFHLPQ RSKVASGGEA AATAAAAAQQ QQQQALIEQL  420
FKVAELVEAG NTVSARGILA RLNQQLPSPV GKPLLRSAFY FKEALHLLTS PTVPNHPPSP  480
LATPFDVVLK LGTVKAFSDV SPVLQFTNFT SVQALLEELR AAPRIHVVDF DIGVGGQWSA  540
FMQELAQRRC TAAGAASPSL KITAFASSCS HHSLELHLTR ENLSHFAADL NIPFEFILHS  600
LNPFDPSPLL SLSSAGADEA IVVNLPVGSF VHPPVPTLLR LVKQLSPKIV ISVDHCSDRS  660
DLPFAQHFAH AFQSYTVLLD SIDAAGTNLE SANKIERFLV QPRIENAVLG RHRNADKMLP  720
WRALFNSAGF VPVQFSNFAE TQAECLLKRV QARGFHVEKR QASLSLCWQR MELVSVSAWR  780
C

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	2e-31	451	780	37	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010934970.1	0.0	scarecrow-like protein 27
TrEMBL	A0A3Q0IA54	0.0	A0A3Q0IA54_PHODC; scarecrow-like protein 6
STRING	XP_008796953.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2020	37	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00150.1	1e-108	GRAS family protein