PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010934651.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family HD-ZIP
Protein Properties Length: 289aa    MW: 32407.7 Da    PI: 8.1555
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010934651.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox603.9e-19122176256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ +++keq  +Lee+F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  XP_010934651.1 122 RKKLRLSKEQSAVLEECFKEHNTLNPKQKIALAKQLNLRPRQVEVWFQNRRARTK 176
                     788899***********************************************98 PP
2HD-ZIP_I/II126.41.3e-40122211191
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                     +kk+rlskeq+++LEe+F+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr +l
  XP_010934651.1 122 RKKLRLSKEQSAVLEECFKEHNTLNPKQKIALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRWCERLTEENRRLQKEVAELR-AL 211
                     69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046182.5E-23294IPR006712HD-ZIP protein, N-terminal
SuperFamilySSF466894.05E-19108179IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-18116181IPR009057Homeodomain-like
PROSITE profilePS5007117.2118178IPR001356Homeobox domain
SMARTSM003893.5E-17120182IPR001356Homeobox domain
CDDcd000868.12E-16122179No hitNo description
PfamPF000461.7E-16122176IPR001356Homeobox domain
PROSITE patternPS000270153176IPR017970Homeobox, conserved site
PfamPF021834.9E-11178212IPR003106Leucine zipper, homeobox-associated
SMARTSM003405.9E-23178221IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MMMEKVDLGL SLGLNSSQNH LPSSTPSPSF PLHQKPQWTN LLSPSVEEAR PILKGIDVNR  60
KPGVERVLEE EEEEGASSPD STLSSLSGKR SERDPFCNTE VHQLERTSSK GVSDEEDGEG  120
SRKKLRLSKE QSAVLEECFK EHNTLNPKQK IALAKQLNLR PRQVEVWFQN RRARTKLKQT  180
EVDCEYLKRW CERLTEENRR LQKEVAELRA LKLLSPMQMP VSMMPPTTLT MCPSCQRVIS  240
PSNSSTTATA ATSSSPANHQ HHHLFPGVAH SNPTWAMAPF GAAYLNQSS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1120126SRKKLRL
2170178RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that plays a role in auxin-mediated morphogenesis. Negatively regulates lateral root elongation. {ECO:0000269|PubMed:12492842}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By indole-3-acetic acid (IAA). {ECO:0000269|PubMed:12492842}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010934651.10.0homeobox-leucine zipper protein HAT4
SwissprotP466018e-83HAT2_ARATH; Homeobox-leucine zipper protein HAT2
TrEMBLA0A2H3Z7Z51e-148A0A2H3Z7Z5_PHODC; homeobox-leucine zipper protein HAT4-like
STRINGXP_008809454.11e-149(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25873889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16780.19e-67homeobox protein 2
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]