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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010934629.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | WRKY | ||||||||
Protein Properties | Length: 517aa MW: 55280.2 Da PI: 7.8502 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97.4 | 9.7e-31 | 192 | 251 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK+ kg+++pr+YYrCt a Cpv+k+v+r+aed +++++tYeg+Hnh+ XP_010934629.1 192 MNDGCQWRKYGQKVAKGNPCPRAYYRCTVApACPVRKQVQRCAEDMSILITTYEGNHNHP 251 58***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.2E-32 | 178 | 253 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.01E-27 | 185 | 253 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.667 | 187 | 253 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.1E-37 | 192 | 252 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.2E-26 | 193 | 251 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 517 aa Download sequence Send to blast |
MDASSRPSSS KPKNSVTISQ ETQPESTKAE RFDVKKPFMA QTVKDYQSPQ MHFFDIVQKE 60 HVKKPDETSS TLDNAEEPEL VSLSLGTRAS RSGKEEEANT YSKGKEDGMI KEGLTLGLHS 120 KVDGSSSGPS EALLNLSPDN SFEEPKEADT GEPWPPSKMM KSSANGEDEV LPQPPLKRAR 180 VSVRARCDAP TMNDGCQWRK YGQKVAKGNP CPRAYYRCTV APACPVRKQV QRCAEDMSIL 240 ITTYEGNHNH PLPMGATAMA STTSAAASML ISGSSTSSCP PFGSLASSTA NLHGFSQVDN 300 SRFKQFYPPN PSIYSSASHP TITLDLTVPS STPQYKFSSN LTYPKYSSTS LNFSSSKSNT 360 IPTSWSGGSS TYGAHFYDKN SMGSLNLGGQ TQDSFNLSYM HKGTSQNPAP SQHLLTETVA 420 NAITSHPSFQ SALATAITSY LGAQGAERAG EGSPAGQVGL KWSEQLALAP TYTSAFTSPS 480 NYSSHHQGSS TFLQPPPALL SAKSASASPV GNGEQKS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 9e-22 | 192 | 253 | 17 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 9e-22 | 192 | 253 | 17 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010934629.2 | 0.0 | probable WRKY transcription factor 72 | ||||
TrEMBL | A0A2H3ZHB4 | 0.0 | A0A2H3ZHB4_PHODC; probable WRKY transcription factor 72 | ||||
STRING | XP_008813530.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5047 | 38 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15130.1 | 7e-76 | WRKY DNA-binding protein 72 |