PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010934470.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family HSF
Protein Properties Length: 358aa    MW: 38715.3 Da    PI: 4.9789
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010934470.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.41.5e-35321222101
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+y++++d++++++isw+++g++f+v+++ +fa+++LpkyFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ F++g+k+ll++
  XP_010934470.1  32 FLTKTYQLVDDPAVDDIISWNDDGSTFIVWHPADFARDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANDCFRRGEKQLLRD 117
                     9*****************************************************************99.........****************** PP

                     XXXXX CS
    HSF_DNA-bind  97 ikrkk 101
                     i+r+k
  XP_010934470.1 118 IHRRK 122
                     ***97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.106.7E-3823115IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.9E-5828121IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.77E-3529121IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.2E-203255IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.4E-3132121IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-207082IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407195IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-208395IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.20.5.1706.1E-4178203No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MAPPMAPAGD QAGEQPPPLP AEGSQRSIPT PFLTKTYQLV DDPAVDDIIS WNDDGSTFIV  60
WHPADFARDL LPKYFKHNNF SSFVRQLNTY GFRKIVPDRW EFANDCFRRG EKQLLRDIHR  120
RKIIPQAAPA PTPVPVATSI AVAMLANQAG SPTNSGEEQV LSSNSSPGAP PPSGSAAELR  180
DENERLRKEN SRLSRELSQM KSLCDNILLL ISKYASSQQQ GGGEGGEGEA AAAVEVASPV  240
LELMPAAGRA AEEGEEERLK AEEVTTSPSR AGPCARLFGV SIGVKRVRGE DDGEDQPQRV  300
SAPGVKPEPL DPGLDLDRQS WILRGALLAH RACKGSDRVA GERESSRALA ELSRDQPL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B9e-27111219129Heat shock factor protein 1
5d5v_B9e-27111219129Heat shock factor protein 1
5d5v_D9e-27111219129Heat shock factor protein 1
5hdg_A6e-273212110110Heat shock factor protein 1
5hdn_A6e-273212110110Heat shock factor protein 1
5hdn_B6e-273212110110Heat shock factor protein 1
5hdn_C6e-273212110110Heat shock factor protein 1
5hdn_D6e-273212110110Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010934470.10.0heat stress transcription factor B-2b
SwissprotQ6Z9C84e-94HFB2B_ORYSJ; Heat stress transcription factor B-2b
TrEMBLA0A2H3YLX91e-178A0A2H3YLX9_PHODC; heat stress transcription factor B-2b-like
STRINGXP_008800793.11e-178(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.13e-71heat shock transcription factor B2A
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Xiang J, et al.
    Heat shock factor OsHsfB2b negatively regulates drought and salt tolerance in rice.
    Plant Cell Rep., 2013. 32(11): p. 1795-806
    [PMID:23949687]