PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010934216.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family E2F/DP
Protein Properties Length: 436aa    MW: 48058.8 Da    PI: 5.4958
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010934216.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP80.81.2e-25145210171
         E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                     r+++sL+llt+kf++ll+++ +g+++ln +a+ L   dv  ++RRiYDi+NVLe+++liek++kn+ir+kg
  XP_010934216.1 145 RYDSSLGLLTKKFINLLREAADGTLDLNRAAEIL---DV--QKRRIYDITNVLEGVGLIEKNSKNRIRCKG 210
                     6899******************************...**..****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.6E-25142211IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.75E-15145206IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013725.0E-33145210IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023193.5E-23147210IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd146607.35E-38221327No hitNo description
SuperFamilySSF1440741.05E-24222326No hitNo description
PfamPF164213.0E-26227324IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MSEVEGSSLP PTELPLPSPH QHAQQILRPA AHRHFPFSPA LALDPHLLPG RSPGPADKDR  60
IGAPDAAVKR QTNGTEINKV ESSEGPIGQR QKEEAGSHIL PTESGTGVKR PRKTKPSKHK  120
KAVQQQLPGP AEGNLSNILN PSSCRYDSSL GLLTKKFINL LREAADGTLD LNRAAEILDV  180
QKRRIYDITN VLEGVGLIEK NSKNRIRCKG INMSRPKELD DQLTASKAAI ETLYAEDCRL  240
DGMIREMQDN LRILTEENSR KWLYLTNDDI NNLPCFEDST LIAIKAPHGT SIEVPDPNEG  300
LDFPQRRYQL LVRSSMGPVD MYLISNHGEI YEASNQNQQP AAMDFCVGCS CKNDMSFLPK  360
DKNTGGTSEQ GRDQAAHSNS SGSTASQECM GGILKIVPSD DDDMDTDYWF SSDPGVSVSD  420
TWRTEYIRAL DPNYPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A6e-21145211774PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010934216.10.0transcription factor E2FB isoform X1
TrEMBLA0A3Q0I0H30.0A0A3Q0I0H3_PHODC; transcription factor E2FB-like
STRINGXP_008785127.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62537148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22220.32e-87E2F transcription factor 1