PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010934137.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family bHLH
Protein Properties Length: 439aa    MW: 47623.7 Da    PI: 6.9382
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010934137.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.75.9e-15257302555
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     hn+ Er+RRdriN+++  L++l+P++      K +Ka++L +++eY+k+Lq
  XP_010934137.1 257 HNQSERKRRDRINQRMRILQKLVPNS-----SKTDKASMLDEVIEYLKQLQ 302
                     9************************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.447252301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.2E-19255326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.8E-17257311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.22E-16257306No hitNo description
PfamPF000102.0E-12257302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.6E-17258307IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0009506Cellular Componentplasmodesma
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MSRCVPRWDL DDAPNPLAHL PFDSLPSPAT FVPTSDYEVA ELTWENGRLG LHGLGHPRIE  60
KPIPKQASSS SAAATAWEKP RPSGTLEAVV DQATRAPLLP WNPSPDLASW LAGPSPHRSS  120
PAVMDALVPC AATPSDDLGD PGGLVRKRAR VGEGGWVCAS QGSAAAPGAG REGEITLVTL  180
DTCGGDDVGF TNTTATATNS VTPETENTSF GRDDRDSVCL SRRSQLDGLC DDDEKTRTGS  240
AGRASTSARR SRAAAIHNQS ERKRRDRINQ RMRILQKLVP NSSKTDKASM LDEVIEYLKQ  300
LQAQVEMMSR MSTMMMPMAM PQLQMSMMAQ MAQMTHMSIG RGMGMMDLNS LNRPSYAGLP  360
PLLHPSAFRP LPTASWDISG DRMQQHGGTI LPDPFSAFLA YQTAQQQQQQ QPASGEAYSR  420
MATLYQQLYQ QPPQANPKP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1260265ERKRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00034PBMTransfer from AT4G00050Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010934137.10.0transcription factor UNE10 isoform X1
RefseqXP_029123102.10.0transcription factor UNE10 isoform X1
TrEMBLA0A3Q0I5K60.0A0A3Q0I5K6_PHODC; transcription factor UNE10-like isoform X3
STRINGXP_002511647.11e-112(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74743140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.13e-57bHLH family protein