PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010934113.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family bHLH
Protein Properties Length: 282aa    MW: 31104.5 Da    PI: 10.2947
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010934113.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.17.5e-1498149155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +r++h ++Er+RR+++N+ ++ Lr+l+P++   + +K + a+++  A++++k+L+
  XP_010934113.1  98 QRMTHIAVERNRRRQMNEHLAVLRSLMPES---YVQKGDQASVVGGAIDFVKELE 149
                     79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.33E-1396153No hitNo description
Gene3DG3DSA:4.10.280.103.9E-1496153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-1796165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.5897148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-1198149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.2E-11103154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MTREALASKA LPTFLVYDTI SATPLHHPDA SSCSSLLFDN GGGGDGLSSL GVGHSMPAML  60
GGLAVAPDSR PSTAAGQGRR KRRRRPRSCK NKEEAESQRM THIAVERNRR RQMNEHLAVL  120
RSLMPESYVQ KGDQASVVGG AIDFVKELEQ LLQSLEVQKR TLRQHKSKAE KTPGIETRST  180
GSSTDETDSP PFAQFFAYPQ YIWRHAPRDC PPPENRSAVA DIEVTLTETH ANLRILSPTR  240
PRQLLKMVAG LQSLRLTILH LNVTTMDSMV LYSLSAKAIV LR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17884RRKRRRR
27983RKRRR
37986RKRRRRPR
498109RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019709194.10.0transcription factor bHLH71
SwissprotQ9C7T42e-63BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A2H3ZMK21e-157A0A2H3ZMK2_PHODC; transcription factor bHLH71-like
STRINGXP_008786321.11e-157(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37123678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.13e-61bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]