PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010934055.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

bHLH

Protein Properties

Length: 263aa MW: 28614.8 Da PI: 6.802

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010934055.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	34.7	3.2e-11	150	197	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka++L + ++YI+ Lq XP_010934055.1 150 SHSLAERARREKISERMKILQDLVPGC----NKVIGKASVLDEIINYIQALQ 197 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	3.61E-11	144	201	No hit	No description
SuperFamily	SSF47459	3.66E-16	144	202	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.2E-16	146	201	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.221	146	196	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.2E-8	150	197	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.6E-11	152	202	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence Send to blast
MDPPSLVSQV PVPEMWQFPT VRVPPSGPRV GRMVPGPEVA AVGNRDASLD ESTVTEQSGG 60 SRGRRKRRDS ASEDESSKLA STSSGNDLTD SEVKRLKAIK STNETSNLKT EAEASSGICN 120 KTVDQNPSPT EPAKQDYIHV RARRGQATDS HSLAERARRE KISERMKILQ DLVPGCNKVI 180 GKASVLDEII NYIQALQRQV ELEAVNSRIN AGIEGFPTKD FGAQTYDTTS SLAFSTQPAR 240 EYGQGSATEW LHMQVGGAFE RVT

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may regulate jasmonate-regulated genes. {ECO:0000250\|UniProtKB:Q69WS3}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010934055.1	0.0	transcription factor BHLH089 isoform X2
Swissprot	Q84T08	4e-89	BH089_ORYSJ; Transcription factor BHLH089
TrEMBL	A0A2H3Z5L8	1e-164	A0A2H3Z5L8_PHODC; transcription factor BHLH089-like isoform X1
STRING	XP_008808720.1	1e-164	(Phoenix dactylifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G59640.1	6e-71	BIG PETAL P

Publications ? help Back to Top
Yilmaz A, et al. GRASSIUS: a platform for comparative regulatory genomics across the grasses. Plant Physiol., 2009. 149(1): p. 171-80 [PMID:18987217]