PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Function |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

XP_010933934.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

BBR-BPC

Protein Properties

Length: 350aa MW: 39173.4 Da PI: 10.2828

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010933934.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	381.6	1.3e-116	1	350	1	301
GAGA_bind 1 mdddgsre..rnkg.yye........paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllal 84 mdd+g+re r+k+ +y+ p+++lken++++ m+++aerd++i+ern+al+ekkaa+aerdma lqrd+a++ern a++erdn+++al XP_010933934.1 1 MDDSGQREngRHKTdQYKqvhaqwmmPQHQLKENQTIKFMAIMAERDNAIQERNIALAEKKAALAERDMAILQRDAAITERNSAIMERDNAIAAL 95 99*99999999999999999778**************************************************************** PP GAGA_bind 85 llvensla.....salpvgvqvlsgtksidslqqlse.......pqledsave.lreeeklealpieeaaeeakekkkkkkrqrakkpkekkakk 166 ++++++ + a+p+g+ +++g+k+i+++qq++ q +d +++ +re++++ea+pi++a e++ + +k k+ ++++k +++ +kk XP_010933934.1 96 QYARENGMnangaPACPPGCAASRGSKHIHHHQQQHLqhihpspAQPSDAPYNhAREMHITEAFPISTASESVAKGRKAKRPRKETKVQNSPSKK 190 98776655888889**************99554568998888899999999*************99999999999988888899999 PP GAGA_bind 167 kkkksekskkkvkkesader..........................skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCC 235 + k+++ks+k ++ ++ + +++e+k +dl+ln+v++De+t+P+PvCsCtG+ +qCYkWGnGGWqSaCC XP_010933934.1 191 PSKSPRKSRKGGGEDLNR-QvtiakpasewrgevggddlnkrvsltKHQEWKGQDLGLNQVTFDEATMPTPVCSCTGKYQQCYKWGNGGWQSACC 284 999776666555555433.258999****************9999****************************************** PP GAGA_bind 236 tttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 ttt+S+yPLPv++++r++R++grKmS+gaf+klL++LaaeG+dl +pvDLkdhWAkHGtn+++ti+ XP_010933934.1 285 TTTLSMYPLPVMPNKRHTRMGGRKMSGGAFRKLLSRLAAEGHDLLQPVDLKDHWAKHGTNRYITIK 350 ***************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF06217	8.8E-99	1	350	IPR010409	GAGA-binding transcriptional activator
SMART	SM01226	3.6E-156	1	350	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence Send to blast
MDDSGQRENG RHKTDQYKQV HAQWMMPQHQ LKENQTIKFM AIMAERDNAI QERNIALAEK 60 KAALAERDMA ILQRDAAITE RNSAIMERDN AIAALQYARE NGMNANGAPA CPPGCAASRG 120 SKHIHHHQQQ HLQHIHPSPA QPSDAPYNHA REMHITEAFP ISTASESVAK GRKAKRPRKE 180 TKVQNSPSKK PSKSPRKSRK GGGEDLNRQV TIAKPASEWR GEVGGDDLNK RVSLTKHQEW 240 KGQDLGLNQV TFDEATMPTP VCSCTGKYQQ CYKWGNGGWQ SACCTTTLSM YPLPVMPNKR 300 HTRMGGRKMS GGAFRKLLSR LAAEGHDLLQ PVDLKDHWAK HGTNRYITIK

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence Send to blast

MDDSGQRENG RHKTDQYKQV HAQWMMPQHQ LKENQTIKFM AIMAERDNAI QERNIALAEK  60
KAALAERDMA ILQRDAAITE RNSAIMERDN AIAALQYARE NGMNANGAPA CPPGCAASRG  120
SKHIHHHQQQ HLQHIHPSPA QPSDAPYNHA REMHITEAFP ISTASESVAK GRKAKRPRKE  180
TKVQNSPSKK PSKSPRKSRK GGGEDLNRQV TIAKPASEWR GEVGGDDLNK RVSLTKHQEW  240
KGQDLGLNQV TFDEATMPTP VCSCTGKYQQ CYKWGNGGWQ SACCTTTLSM YPLPVMPNKR  300
HTRMGGRKMS GGAFRKLLSR LAAEGHDLLQ PVDLKDHWAK HGTNRYITIK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010933934.1	0.0	barley B recombinant-like protein D
Swissprot	Q5VSA8	1e-145	BBRD_ORYSJ; Barley B recombinant-like protein D
TrEMBL	A0A2H3YTL8	0.0	A0A2H3YTL8_PHODC; barley B recombinant-like protein D isoform X2
STRING	XP_008803315.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6226	37	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42520.1	1e-101	basic pentacysteine 6

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]