PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010933772.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family Trihelix
Protein Properties Length: 789aa    MW: 85679 Da    PI: 6.3342
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010933772.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix988e-31105189187
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                     rW++qe+laL+++r++m+ ++r++ lk+plWe+vs++++e g++rs+k+Ckek+en++k+yk++keg+ +r++++s  +++f+qlea
  XP_010933772.1 105 RWPRQETLALLKIRSDMDAAFREATLKGPLWEDVSRRLAELGYRRSAKKCKEKFENVHKYYKRTKEGRAGRQDGKS--YRFFSQLEA 189
                     8*********************************************************************866665..*******85 PP
2trihelix106.61.8e-33508593187
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                     rW+k ev+aLi++r+ +e +++++  k+plWee+s+ m++ g++rs+k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ql+a
  XP_010933772.1 508 RWPKAEVHALIKMRSGLELKYQETGPKGPLWEEISAGMQRLGYNRSAKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLDA 593
                     8*********************************************************************8.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.73798162IPR017877Myb-like domain
SMARTSM007170.019102164IPR001005SANT/Myb domain
PfamPF138377.3E-21104190No hitNo description
CDDcd122034.25E-27104169No hitNo description
PROSITE profilePS500907.05501565IPR017877Myb-like domain
SMARTSM007170.037505567IPR001005SANT/Myb domain
PfamPF138371.5E-23507594No hitNo description
CDDcd122031.23E-29507572No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 789 aa     Download sequence    Send to blast
MQQQGGSQYG VPPPPDLTPF SSPGAAPRAH MLGISSPDPL QQQPPQLAEA ASPISSRPPP  60
PGTAPRSLST NFEELVPAVP GNFPDDEALA AAGEEVERGS APGNRWPRQE TLALLKIRSD  120
MDAAFREATL KGPLWEDVSR RLAELGYRRS AKKCKEKFEN VHKYYKRTKE GRAGRQDGKS  180
YRFFSQLEAL HSSSSTSAAA PSPTTTAPAL PTAATAAASP TPIAPSGIST GMVGPSTGRI  240
QPPPISSVAP PPITMPTRVG PELTPTTGAT PPGISFSAAA TAGISFSSDT SSSSASSESD  300
DEETEEAGGS REGRKRKRVG GSGRSRKMRA FFEGLMKQVM ERQEAMQQRF LEAIEKREQD  360
RMIREEAWRR QEMARLNREH ELLAQERAMA ASRDAAIISY IQKISGQTVQ LPTITAAPSI  420
TLAPPQQPSV TPPPASAPPP QQPQQPPSQQ QQHQKSPSLM QPALQQQELH QHHQSTEIGR  480
HQVSSSSELV LVPEPQETMS FETVSSSRWP KAEVHALIKM RSGLELKYQE TGPKGPLWEE  540
ISAGMQRLGY NRSAKRCKEK WENINKYFKK VKESNKKRPE DSKTCPYFHQ LDALYRKKLG  600
GSGGGGRGGS SGFGIQQQES NPQERSDVPT IMAPPPAPPP QQPPAETESK KGNNNNNNNN  660
DGNNNNNNRN GGNSECGGGS RAIQMQTSNG GLSPTFLEEG SSTKMKKPED IVKELMDQRQ  720
QQAAMEDYDK MEEPDSDNID QDDDDEDDED DEDGKMQYEI QFQRPNVGGG GGTTSTASTT  780
SGSFLAMVQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00244DAPTransfer from AT1G76890Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010933772.10.0trihelix transcription factor GTL1 isoform X1
TrEMBLA0A2H3ZAT80.0A0A2H3ZAT8_PHODC; trihelix transcription factor GTL1-like
STRINGXP_008810715.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60638175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.13e-50Trihelix family protein