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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010933683.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | GRAS | ||||||||
Protein Properties | Length: 802aa MW: 84893.8 Da PI: 6.7934 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 281.7 | 2.2e-86 | 439 | 800 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlar.svselykalppsetsekn.sseelaalklfsevsPilkf 93 v++L+e+A++v++gd a+ +Larl+++ sp+g+p+ R a+yf+eAL++ l + s s++ + +p ++ + + + +l++lk+fsevsPil f XP_010933683.1 439 VDQLFEAAKMVEAGDSVGARGILARLNHQlPSPQGKPLLRSAFYFKEALHRILGDaSDSHTRRVFPNNPMRGSLeAVLKLTSLKAFSEVSPILMF 533 689************************998**********************999666666666677777655456777888899********** PP GRAS 94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp...egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakr 185 +++t+ qa+le ++g++++Hi+Dfdi+ G++W a++++La+R+ +gpp+lRiT+++spe+ + el+ + La A +l++pfef+v+ + XP_010933683.1 534 TNVTCIQALLEGLAGADCIHIVDFDIGSGTHWSAFMHELAQRSctdGGPPMLRITAFVSPEAYHPLELNLARGTLAFWAGRLNIPFEFSVM---N 625 *******************************************9999*******************************************7...6 PP GRAS 186 ledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres 279 l+++++ ++r + +aVnl + + l s +++L+lvk+l Pkvvv v+ +d+++ +F ++fl+a++ +++l+ds++a +++ XP_010933683.1 626 LDNFDPLAIRNPVvDAPIAVNLPVGSAHNL-------S--PTLLRLVKQLTPKVVVSVDLGCDRSELPFSHHFLHAFQSCMVLLDSIDAA-GTDR 710 66665555554447888******9888887.......3..68*********************************************998.8999 PP GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 + ++++E ++l+++i++ + ++++ ++ Wr+ + +aGF p+++s+++++qa++ll++v+++g++ve+++gsl+l+W++r+LvsvSaW XP_010933683.1 711 DVAANIECFILRPRIESSILGRHRA----ADKMLPWRMLFASAGFVPLQFSSTTEAQADCLLQRVPVRGFHVEKRQGSLFLYWQRRELVSVSAW 800 *******************999998....88899************************************************************ PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 37.696 | 412 | 781 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 7.6E-84 | 439 | 800 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 802 aa Download sequence Send to blast |
MKDVPFSGKG KRASELVGEA GQGEEAIFVG ENKKQRRVGS KEGLEPRSVL ETRRSLSPPS 60 STSTLSSSLC GGGGGGGGAG GGSSDSASVA AAAAAAVLDA PGPRDGPISG EWPISGEYGG 120 AGPHRREEWA SELQPITGGL DLGFDCGERG GLGVEDWEAV FSEPAVSPGQ EQTFLRWIMG 180 DVEVPPTSSA AAAAYGPRQQ PQFSPGPAEF DGHNSGLGFG GLDDPAGFGL EATGGMDGAS 240 SFSPSSITLP SPHPPFSSSD LSSGGRGLSL SSSNTSTSSS GIPPQPPSTG IQAPTFGRQT 300 SHALFSPTPL PAAAAGMFFQ KPNFSSNPLL NRQLQLHSPS NPAFLVPGTS AAAAPAPHQP 360 PPPPPQLLPP QHKRRHSMVS NTNGQIPSRP PFPKPSGRPD LFLQRSHLAQ QHLQGFPLSH 420 LQTSAPGDAA PAQQQQAVVD QLFEAAKMVE AGDSVGARGI LARLNHQLPS PQGKPLLRSA 480 FYFKEALHRI LGDASDSHTR RVFPNNPMRG SLEAVLKLTS LKAFSEVSPI LMFTNVTCIQ 540 ALLEGLAGAD CIHIVDFDIG SGTHWSAFMH ELAQRSCTDG GPPMLRITAF VSPEAYHPLE 600 LNLARGTLAF WAGRLNIPFE FSVMNLDNFD PLAIRNPVVD APIAVNLPVG SAHNLSPTLL 660 RLVKQLTPKV VVSVDLGCDR SELPFSHHFL HAFQSCMVLL DSIDAAGTDR DVAANIECFI 720 LRPRIESSIL GRHRAADKML PWRMLFASAG FVPLQFSSTT EAQADCLLQR VPVRGFHVEK 780 RQGSLFLYWQ RRELVSVSAW GC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 1e-24 | 444 | 800 | 25 | 378 | Protein SCARECROW |
5b3h_A | 1e-24 | 444 | 800 | 24 | 377 | Protein SCARECROW |
5b3h_D | 1e-24 | 444 | 800 | 24 | 377 | Protein SCARECROW |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010933683.1 | 0.0 | scarecrow-like protein 22 | ||||
TrEMBL | A0A2H3YCR2 | 0.0 | A0A2H3YCR2_PHODC; scarecrow-like protein 6 | ||||
STRING | XP_008796806.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2020 | 37 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00150.1 | 6e-92 | GRAS family protein |