PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

XP_010933683.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

GRAS

Protein Properties

Length: 802aa MW: 84893.8 Da PI: 6.7934

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010933683.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	281.7	2.2e-86	439	800	2	373
GRAS 2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlar.svselykalppsetsekn.sseelaalklfsevsPilkf 93 v++L+e+A++v++gd a+ +Larl+++ sp+g+p+ R a+yf+eAL++ l + s s++ + +p ++ + + + +l++lk+fsevsPil f XP_010933683.1 439 VDQLFEAAKMVEAGDSVGARGILARLNHQlPSPQGKPLLRSAFYFKEALHRILGDaSDSHTRRVFPNNPMRGSLeAVLKLTSLKAFSEVSPILMF 533 689**********************998******************999666666666677777655456777888899****** PP GRAS 94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp...egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakr 185 +++t+ qa+le ++g++++Hi+Dfdi+ G++W a++++La+R+ +gpp+lRiT+++spe+ + el+ + La A +l++pfef+v+ + XP_010933683.1 534 TNVTCIQALLEGLAGADCIHIVDFDIGSGTHWSAFMHELAQRSctdGGPPMLRITAFVSPEAYHPLELNLARGTLAFWAGRLNIPFEFSVM---N 625 ***************************************9999***************************************7...6 PP GRAS 186 ledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres 279 l+++++ ++r + +aVnl + + l s +++L+lvk+l Pkvvv v+ +d+++ +F ++fl+a++ +++l+ds++a +++ XP_010933683.1 626 LDNFDPLAIRNPVvDAPIAVNLPVGSAHNL-------S--PTLLRLVKQLTPKVVVSVDLGCDRSELPFSHHFLHAFQSCMVLLDSIDAA-GTDR 710 66665555554447888**9888887.......3..68*****************************************998.8999 PP GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 + ++++E ++l+++i++ + ++++ ++ Wr+ + +aGF p+++s+++++qa++ll++v+++g++ve+++gsl+l+W++r+LvsvSaW XP_010933683.1 711 DVAANIECFILRPRIESSILGRHRA----ADKMLPWRMLFASAGFVPLQFSSTTEAQADCLLQRVPVRGFHVEKRQGSLFLYWQRRELVSVSAW 800 ***************999998....88899********************************************************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	37.696	412	781	IPR005202	Transcription factor GRAS
Pfam	PF03514	7.6E-84	439	800	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 802 aa Download sequence Send to blast
MKDVPFSGKG KRASELVGEA GQGEEAIFVG ENKKQRRVGS KEGLEPRSVL ETRRSLSPPS 60 STSTLSSSLC GGGGGGGGAG GGSSDSASVA AAAAAAVLDA PGPRDGPISG EWPISGEYGG 120 AGPHRREEWA SELQPITGGL DLGFDCGERG GLGVEDWEAV FSEPAVSPGQ EQTFLRWIMG 180 DVEVPPTSSA AAAAYGPRQQ PQFSPGPAEF DGHNSGLGFG GLDDPAGFGL EATGGMDGAS 240 SFSPSSITLP SPHPPFSSSD LSSGGRGLSL SSSNTSTSSS GIPPQPPSTG IQAPTFGRQT 300 SHALFSPTPL PAAAAGMFFQ KPNFSSNPLL NRQLQLHSPS NPAFLVPGTS AAAAPAPHQP 360 PPPPPQLLPP QHKRRHSMVS NTNGQIPSRP PFPKPSGRPD LFLQRSHLAQ QHLQGFPLSH 420 LQTSAPGDAA PAQQQQAVVD QLFEAAKMVE AGDSVGARGI LARLNHQLPS PQGKPLLRSA 480 FYFKEALHRI LGDASDSHTR RVFPNNPMRG SLEAVLKLTS LKAFSEVSPI LMFTNVTCIQ 540 ALLEGLAGAD CIHIVDFDIG SGTHWSAFMH ELAQRSCTDG GPPMLRITAF VSPEAYHPLE 600 LNLARGTLAF WAGRLNIPFE FSVMNLDNFD PLAIRNPVVD APIAVNLPVG SAHNLSPTLL 660 RLVKQLTPKV VVSVDLGCDR SELPFSHHFL HAFQSCMVLL DSIDAAGTDR DVAANIECFI 720 LRPRIESSIL GRHRAADKML PWRMLFASAG FVPLQFSSTT EAQADCLLQR VPVRGFHVEK 780 RQGSLFLYWQ RRELVSVSAW GC

Sequence ? help Back to Top

Protein Sequence Length: 802 aa Download sequence Send to blast

MKDVPFSGKG KRASELVGEA GQGEEAIFVG ENKKQRRVGS KEGLEPRSVL ETRRSLSPPS  60
STSTLSSSLC GGGGGGGGAG GGSSDSASVA AAAAAAVLDA PGPRDGPISG EWPISGEYGG  120
AGPHRREEWA SELQPITGGL DLGFDCGERG GLGVEDWEAV FSEPAVSPGQ EQTFLRWIMG  180
DVEVPPTSSA AAAAYGPRQQ PQFSPGPAEF DGHNSGLGFG GLDDPAGFGL EATGGMDGAS  240
SFSPSSITLP SPHPPFSSSD LSSGGRGLSL SSSNTSTSSS GIPPQPPSTG IQAPTFGRQT  300
SHALFSPTPL PAAAAGMFFQ KPNFSSNPLL NRQLQLHSPS NPAFLVPGTS AAAAPAPHQP  360
PPPPPQLLPP QHKRRHSMVS NTNGQIPSRP PFPKPSGRPD LFLQRSHLAQ QHLQGFPLSH  420
LQTSAPGDAA PAQQQQAVVD QLFEAAKMVE AGDSVGARGI LARLNHQLPS PQGKPLLRSA  480
FYFKEALHRI LGDASDSHTR RVFPNNPMRG SLEAVLKLTS LKAFSEVSPI LMFTNVTCIQ  540
ALLEGLAGAD CIHIVDFDIG SGTHWSAFMH ELAQRSCTDG GPPMLRITAF VSPEAYHPLE  600
LNLARGTLAF WAGRLNIPFE FSVMNLDNFD PLAIRNPVVD APIAVNLPVG SAHNLSPTLL  660
RLVKQLTPKV VVSVDLGCDR SELPFSHHFL HAFQSCMVLL DSIDAAGTDR DVAANIECFI  720
LRPRIESSIL GRHRAADKML PWRMLFASAG FVPLQFSSTT EAQADCLLQR VPVRGFHVEK  780
RQGSLFLYWQ RRELVSVSAW GC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	1e-24	444	800	25	378	Protein SCARECROW
5b3h_A	1e-24	444	800	24	377	Protein SCARECROW
5b3h_D	1e-24	444	800	24	377	Protein SCARECROW

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010933683.1	0.0	scarecrow-like protein 22
TrEMBL	A0A2H3YCR2	0.0	A0A2H3YCR2_PHODC; scarecrow-like protein 6
STRING	XP_008796806.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2020	37	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00150.1	6e-92	GRAS family protein