PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010933683.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family GRAS
Protein Properties Length: 802aa    MW: 84893.8 Da    PI: 6.7934
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010933683.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS281.72.2e-864398002373
            GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlar.svselykalppsetsekn.sseelaalklfsevsPilkf 93 
                     v++L+e+A++v++gd   a+ +Larl+++  sp+g+p+ R a+yf+eAL++ l + s s++ + +p ++ + +   + +l++lk+fsevsPil f
  XP_010933683.1 439 VDQLFEAAKMVEAGDSVGARGILARLNHQlPSPQGKPLLRSAFYFKEALHRILGDaSDSHTRRVFPNNPMRGSLeAVLKLTSLKAFSEVSPILMF 533
                     689************************998**********************999666666666677777655456777888899********** PP

            GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp...egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakr 185
                     +++t+ qa+le ++g++++Hi+Dfdi+ G++W a++++La+R+   +gpp+lRiT+++spe+ +  el+  +  La  A +l++pfef+v+   +
  XP_010933683.1 534 TNVTCIQALLEGLAGADCIHIVDFDIGSGTHWSAFMHELAQRSctdGGPPMLRITAFVSPEAYHPLELNLARGTLAFWAGRLNIPFEFSVM---N 625
                     *******************************************9999*******************************************7...6 PP

            GRAS 186 ledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres 279
                     l+++++ ++r    +  +aVnl +   + l       s  +++L+lvk+l Pkvvv v+  +d+++ +F ++fl+a++ +++l+ds++a  +++ 
  XP_010933683.1 626 LDNFDPLAIRNPVvDAPIAVNLPVGSAHNL-------S--PTLLRLVKQLTPKVVVSVDLGCDRSELPFSHHFLHAFQSCMVLLDSIDAA-GTDR 710
                     66665555554447888******9888887.......3..68*********************************************998.8999 PP

            GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                     + ++++E ++l+++i++ +  ++++      ++  Wr+ + +aGF p+++s+++++qa++ll++v+++g++ve+++gsl+l+W++r+LvsvSaW
  XP_010933683.1 711 DVAANIECFILRPRIESSILGRHRA----ADKMLPWRMLFASAGFVPLQFSSTTEAQADCLLQRVPVRGFHVEKRQGSLFLYWQRRELVSVSAW 800
                     *******************999998....88899************************************************************ PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098537.696412781IPR005202Transcription factor GRAS
PfamPF035147.6E-84439800IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 802 aa     Download sequence    Send to blast
MKDVPFSGKG KRASELVGEA GQGEEAIFVG ENKKQRRVGS KEGLEPRSVL ETRRSLSPPS  60
STSTLSSSLC GGGGGGGGAG GGSSDSASVA AAAAAAVLDA PGPRDGPISG EWPISGEYGG  120
AGPHRREEWA SELQPITGGL DLGFDCGERG GLGVEDWEAV FSEPAVSPGQ EQTFLRWIMG  180
DVEVPPTSSA AAAAYGPRQQ PQFSPGPAEF DGHNSGLGFG GLDDPAGFGL EATGGMDGAS  240
SFSPSSITLP SPHPPFSSSD LSSGGRGLSL SSSNTSTSSS GIPPQPPSTG IQAPTFGRQT  300
SHALFSPTPL PAAAAGMFFQ KPNFSSNPLL NRQLQLHSPS NPAFLVPGTS AAAAPAPHQP  360
PPPPPQLLPP QHKRRHSMVS NTNGQIPSRP PFPKPSGRPD LFLQRSHLAQ QHLQGFPLSH  420
LQTSAPGDAA PAQQQQAVVD QLFEAAKMVE AGDSVGARGI LARLNHQLPS PQGKPLLRSA  480
FYFKEALHRI LGDASDSHTR RVFPNNPMRG SLEAVLKLTS LKAFSEVSPI LMFTNVTCIQ  540
ALLEGLAGAD CIHIVDFDIG SGTHWSAFMH ELAQRSCTDG GPPMLRITAF VSPEAYHPLE  600
LNLARGTLAF WAGRLNIPFE FSVMNLDNFD PLAIRNPVVD APIAVNLPVG SAHNLSPTLL  660
RLVKQLTPKV VVSVDLGCDR SELPFSHHFL HAFQSCMVLL DSIDAAGTDR DVAANIECFI  720
LRPRIESSIL GRHRAADKML PWRMLFASAG FVPLQFSSTT EAQADCLLQR VPVRGFHVEK  780
RQGSLFLYWQ RRELVSVSAW GC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-2444480025378Protein SCARECROW
5b3h_A1e-2444480024377Protein SCARECROW
5b3h_D1e-2444480024377Protein SCARECROW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010933683.10.0scarecrow-like protein 22
TrEMBLA0A2H3YCR20.0A0A2H3YCR2_PHODC; scarecrow-like protein 6
STRINGXP_008796806.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20203796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.16e-92GRAS family protein