PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010933664.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | GATA | ||||||||
Protein Properties | Length: 336aa MW: 35371.3 Da PI: 6.7916 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 55.7 | 6.8e-18 | 231 | 265 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++C + kTp+WR gp g+ktLCnaCG++y++ +l XP_010933664.1 231 CTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRL 265 *******************************9885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 2.2E-16 | 225 | 275 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.85E-14 | 229 | 289 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.2E-13 | 229 | 263 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE profile | PS50114 | 11.385 | 229 | 261 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 6.31E-14 | 230 | 277 | No hit | No description |
Pfam | PF00320 | 9.9E-16 | 231 | 265 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 231 | 256 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009416 | Biological Process | response to light stimulus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 336 aa Download sequence Send to blast |
MAAEWEIGMG MDFGMGMGPG ASAAAAPLTA TAAPAYLYGL PSADTLRIDD LLDFSNHDHF 60 PSMEAHLLPP PEPSSAVTAT TRPPFSGETD SSSDFQPHHH PSSFPDDLYI PSEEAAELEW 120 LSKFVEDSFS DIPYPPAATG VATPAGGAHL RAEPSVPGRG ARSKRSRAPT GSAAAVAWSS 180 LQPPSQSSPS SSSSSSDFPQ SKPKASAGDN SNNGRGKKGG GEIVEGGVRR CTHCASEKTP 240 QWRTGPLGPK TLCNACGVRY KSGRLVPEYR PAASPTFVLT QHSNSHRKVM ELRRQKEILL 300 RHENPTSPSS ASAAAVSVTA ATAPRPELLF HDYGVC |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010933664.1 | 0.0 | GATA transcription factor 4 | ||||
Swissprot | O49741 | 3e-66 | GATA2_ARATH; GATA transcription factor 2 | ||||
TrEMBL | A0A2H3YBB2 | 1e-169 | A0A2H3YBB2_PHODC; GATA transcription factor | ||||
STRING | XP_008796101.1 | 1e-170 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4621 | 29 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45050.1 | 8e-57 | GATA transcription factor 2 |
Publications ? help Back to Top | |||
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