PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010933658.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family SBP
Protein Properties Length: 364aa    MW: 39773.5 Da    PI: 8.5551
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010933658.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP131.23.6e-41128205178
                     --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
             SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                     +CqvegC++ l +ak+yh+rhkvCe+hskap+v+v g eqrfCqqCsrfh +sefD++krsCrrrLa+hnerrrk+++
  XP_010933658.1 128 RCQVEGCNKALVDAKDYHKRHKVCEMHSKAPKVVVLGAEQRFCQQCSRFHVISEFDDAKRSCRRRLAGHNERRRKSTN 205
                     6**************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.7E-34124190IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.282126203IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.1E-38127208IPR004333Transcription factor, SBP-box
PfamPF031109.7E-32129202IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MENGGGAVKS GGQGAPSSWD IWDLGNWSSA AIAAAPSYYN PHAIASSTAS SFSSSSCCPP  60
FTDHAAMVPT ATGDHLAQGQ RYGHHHHHLT CLKLGKRQYY GEEGIAGGGI KREKLSSNPA  120
AAAAAVPRCQ VEGCNKALVD AKDYHKRHKV CEMHSKAPKV VVLGAEQRFC QQCSRFHVIS  180
EFDDAKRSCR RRLAGHNERR RKSTNDSIRN PSLENTMMSS RFPYVPTSPG RAHSLLSSKA  240
SPWVSSTDLS SRSSAALREL IAENRAAVFA RQLFSDRGGW HNVCSGNQAT LPYVPHQHPE  300
PLQAQAQLMD GWNQFQEAGN HHVTLDLMQM PSSSFGILSG RRKSKEDEEE CCEIWKSLEG  360
AHVV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A7e-30120202284squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029123105.10.0squamosa promoter-binding-like protein 7
SwissprotQ01JD12e-60SPL7_ORYSI; Squamosa promoter-binding-like protein 7
SwissprotQ7XT422e-60SPL7_ORYSJ; Squamosa promoter-binding-like protein 7
TrEMBLA0A2H3YBM90.0A0A2H3YBM9_PHODC; squamosa promoter-binding-like protein 7 isoform X1
STRINGXP_008796104.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP103033439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33810.17e-37squamosa promoter binding protein-like 3
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]