PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Regulation |

Basic Information? help Back to Top

TF ID

XP_010933536.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

STAT

Protein Properties

Length: 653aa MW: 73238.2 Da PI: 5.5141

Description

STAT family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010933536.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	STAT	190.6	1.7e-59	167	286	1	119
STAT 1 ldvvllnalgqpvekdvevvasLlyadsglvveks.ddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfeipklkk 94 ldvvllna+g++v+k++e+vasL+yad+g++vek+ ddaeapLL+sydG+e++s+drp+ llrG+a+fklkisqLssk+dnrLfr++f++++ ++ XP_010933536.1 167 LDVVLLNAFGRTVNKEMEIVASLVYADNGTPVEKTrDDAEAPLLTSYDGLEHPSTDRPVTLLRGCATFKLKISQLSSKSDNRLFRVCFRTMHAQR 261 8********************************9******************************************************* PP STAT 95 ypfleavskpirCisrsrntrsssl 119 ypflea+s+pi+Cisr+r++r+++l XP_010933536.1 262 YPFLEAYSHPIHCISRNRSNRPLAL 286 *******************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55550	1.35E-8	551	631	IPR000980	SH2 domain
Gene3D	G3DSA:3.30.505.10	1.4E-6	552	618	IPR000980	SH2 domain
PROSITE profile	PS50001	9.93	555	618	IPR000980	SH2 domain

Sequence ? help Back to Top
Protein Sequence Length: 653 aa Download sequence Send to blast
MADEQWREED YSQLRDLRVS LDQVGEDGEG RGDGGGDGGS GFSLCLWLYL SSSARPSSMI 60 LRQMTSENEG EVPFLALSEQ NKLMLFPLMF LHKEAPSTGS SFTWTDMPHI SSKIEFPLEK 120 WVHVGCEDPP VKLSLDSSGI SDGVEECGDG VWSIVGGKAS CRRNFSLDVV LLNAFGRTVN 180 KEMEIVASLV YADNGTPVEK TRDDAEAPLL TSYDGLEHPS TDRPVTLLRG CATFKLKISQ 240 LSSKSDNRLF RVCFRTMHAQ RYPFLEAYSH PIHCISRNRS NRPLALGKRL ASTRVLLDEI 300 QSLKGNDGSR VIHDTYGDDR FRIPNQSVLR CNTPSKHSKL EHDSSPSAID ANGILEKDEM 360 SLKTSLEVRS NNFEGTDSAP SDSESTDARN YESRWTKEAM NPISDAIMFK YCLEGTNERL 420 MLLKEMITSA CDEDITNFAE QVSLYAGCSH HQYQILISKR LLQEGADTWN SITQNNCHVL 480 WKDAVPEIDK RFRNTAHSNR GLSGEDLEVL RGIAGCGDHL GREEFDRMWY WLYPVAFSLS 540 NEQINTMWAC ISPKWIEGLI TREEAENALK GPRGLQRPGT FVLRFPTSRS WPHPDAGSLV 600 VTYVAADSTL HHKLLSFDYR KKDTSPLQEL LLEEPELSHL GRVSRQGHAA SQS

Sequence ? help Back to Top

Protein Sequence Length: 653 aa Download sequence Send to blast

MADEQWREED YSQLRDLRVS LDQVGEDGEG RGDGGGDGGS GFSLCLWLYL SSSARPSSMI  60
LRQMTSENEG EVPFLALSEQ NKLMLFPLMF LHKEAPSTGS SFTWTDMPHI SSKIEFPLEK  120
WVHVGCEDPP VKLSLDSSGI SDGVEECGDG VWSIVGGKAS CRRNFSLDVV LLNAFGRTVN  180
KEMEIVASLV YADNGTPVEK TRDDAEAPLL TSYDGLEHPS TDRPVTLLRG CATFKLKISQ  240
LSSKSDNRLF RVCFRTMHAQ RYPFLEAYSH PIHCISRNRS NRPLALGKRL ASTRVLLDEI  300
QSLKGNDGSR VIHDTYGDDR FRIPNQSVLR CNTPSKHSKL EHDSSPSAID ANGILEKDEM  360
SLKTSLEVRS NNFEGTDSAP SDSESTDARN YESRWTKEAM NPISDAIMFK YCLEGTNERL  420
MLLKEMITSA CDEDITNFAE QVSLYAGCSH HQYQILISKR LLQEGADTWN SITQNNCHVL  480
WKDAVPEIDK RFRNTAHSNR GLSGEDLEVL RGIAGCGDHL GREEFDRMWY WLYPVAFSLS  540
NEQINTMWAC ISPKWIEGLI TREEAENALK GPRGLQRPGT FVLRFPTSRS WPHPDAGSLV  600
VTYVAADSTL HHKLLSFDYR KKDTSPLQEL LLEEPELSHL GRVSRQGHAA SQS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010933537.1	0.0	SH2 domain-containing protein B isoform X2
TrEMBL	A0A2H3XNE8	0.0	A0A2H3XNE8_PHODC; LOW QUALITY PROTEIN: SH2 domain-containing protein B-like
STRING	XP_008786220.1	0.0	(Phoenix dactylifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G78540.1	1e-135	SH2 domain protein B