PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010933443.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family B3
Protein Properties Length: 192aa    MW: 21320 Da    PI: 6.2266
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010933443.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.81.3e-1582170599
                     -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                      ++s + +  +l +p++f++     + es+  ++ +   r+We++++ +++ +r  + +GWk+F+ +n+Lk gD +vF+l+++++ ++ v+++r 
  XP_010933443.1  82 VSKSQTQSPFQLGVPRRFCSLL---PSESVS-VFLSCGRRTWEMRYCGDGSLKR--FDRGWKNFAIDNNLKIGDGCVFELIDHKNMKFQVRILRG 170
                     56777888899********444...445544.5577799*******66666666..9************************88888889999885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.61E-1973169IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.8E-2074169IPR015300DNA-binding pseudobarrel domain
CDDcd100175.52E-2276169No hitNo description
SMARTSM010192.8E-1278171IPR003340B3 DNA binding domain
PROSITE profilePS5086312.87278171IPR003340B3 DNA binding domain
PfamPF023621.8E-1382170IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MDHSISGSNG QQRHCRIPLE EQCLSQESCN HANQYPVANN GKNGESSVGS HAPQPIQTEP  60
IIPEEQDEVV PLSGNPYFTC IVSKSQTQSP FQLGVPRRFC SLLPSESVSV FLSCGRRTWE  120
MRYCGDGSLK RFDRGWKNFA IDNNLKIGDG CVFELIDHKN MKFQVRILRG EIPCPLVDGA  180
GGQSHDSPIM ID
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010933441.11e-142B3 domain-containing protein Os04g0386900 isoform X1
TrEMBLA0A2H3X1121e-102A0A2H3X112_PHODC; B3 domain-containing protein Os04g0386900-like
STRINGXP_008776698.11e-103(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.13e-10B3 family protein