PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010933440.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

HSF

Protein Properties

Length: 504aa MW: 54661.9 Da PI: 4.5007

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010933440.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	111.2	7.1e-35	33	125	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl+k+ye+++d++++ ++sw + +nsfvv+++ efa+++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F +g+++ll+ XP_010933440.1 33 FLSKTYEMVDDPATDAIVSWGTANNSFVVWNTPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGRNDLLKI 118 9**************************************************************999.........************** PP XXXXXXX CS HSF_DNA-bind 97 ikrkkse 103 i+r+k + XP_010933440.1 119 INRRKPS 125 *9975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	2.9E-38	26	116	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	1.24E-34	28	122	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	8.5E-60	29	122	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.2E-19	33	56	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	1.3E-30	33	122	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.2E-19	71	83	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	72	96	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.2E-19	84	96	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 504 aa Download sequence Send to blast
MDGNGGGSGG GGERVAVAAS AKPNLNGNAP PPFLSKTYEM VDDPATDAIV SWGTANNSFV 60 VWNTPEFARD LLPKYFKHNN FSSFVRQLNT YGFRKVDPDR WEFANEGFLR GRNDLLKIIN 120 RRKPSHAHGQ TQQPQPENAS LSACVEVGKF GLEEEIERLK RDKNVLMQEL VKLRQQQQST 180 DHQLRTLGKR LEGMERRQQQ MMSFLAKALQ SPGFLAQLMQ KNDNNRLIAG GNKKRRFRKQ 240 RGSLGGDSAS PDGQIIKYQP LTDEAAKAIL RQILKAGSSQ PRLESSSKSD NILLENFPSS 300 SGAFDSSSSG QNSGVTLAEL PPNSGVPYVP SGSGFSPVGS SSAVSEIQAS AGATDTAANN 360 DILSAVPEAI APTDMSIPEF PGLEGVMPDD SVDILSENFA MSDPETLYID PITAGMDGAA 420 VPIETEKVSA DTNIDTLDDD PMLPGIIDSF WEEFLSSPLT EETEAELSIL EAKEIQSGPE 480 NGWANAQNME HLTEQMLLLS SDPK

Sequence ? help Back to Top

Protein Sequence Length: 504 aa Download sequence Send to blast

MDGNGGGSGG GGERVAVAAS AKPNLNGNAP PPFLSKTYEM VDDPATDAIV SWGTANNSFV  60
VWNTPEFARD LLPKYFKHNN FSSFVRQLNT YGFRKVDPDR WEFANEGFLR GRNDLLKIIN  120
RRKPSHAHGQ TQQPQPENAS LSACVEVGKF GLEEEIERLK RDKNVLMQEL VKLRQQQQST  180
DHQLRTLGKR LEGMERRQQQ MMSFLAKALQ SPGFLAQLMQ KNDNNRLIAG GNKKRRFRKQ  240
RGSLGGDSAS PDGQIIKYQP LTDEAAKAIL RQILKAGSSQ PRLESSSKSD NILLENFPSS  300
SGAFDSSSSG QNSGVTLAEL PPNSGVPYVP SGSGFSPVGS SSAVSEIQAS AGATDTAANN  360
DILSAVPEAI APTDMSIPEF PGLEGVMPDD SVDILSENFA MSDPETLYID PITAGMDGAA  420
VPIETEKVSA DTNIDTLDDD PMLPGIIDSF WEEFLSSPLT EETEAELSIL EAKEIQSGPE  480
NGWANAQNME HLTEQMLLLS SDPK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hdg_A	8e-26	31	122	8	110	Heat shock factor protein 1
5hdn_A	8e-26	31	122	8	110	Heat shock factor protein 1
5hdn_B	8e-26	31	122	8	110	Heat shock factor protein 1
5hdn_C	8e-26	31	122	8	110	Heat shock factor protein 1
5hdn_D	8e-26	31	122	8	110	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not induced by heat stress. {ECO:0000269\|PubMed:18064488}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010933440.1	0.0	heat stress transcription factor A-1
Swissprot	Q84T61	0.0	HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBL	A0A2H3X109	0.0	A0A2H3X109_PHODC; heat stress transcription factor A-1-like
STRING	XP_008776696.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5097	31	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32330.1	1e-130	heat shock transcription factor A1D

Publications ? help Back to Top
Chauhan H,Khurana N,Agarwal P,Khurana P Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress. Mol. Genet. Genomics, 2011. 286(2): p. 171-87 [PMID:21792744]