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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010933428.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 748aa MW: 82485.3 Da PI: 5.9679 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 66.3 | 4.1e-21 | 42 | 97 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++e+e+lF+++++p+ ++r +L+++lgL+ rqVk+WFqNrR+++k XP_010933428.1 42 KKRYHRHTAHQIQEMEALFKECPHPDDKQRLKLSHELGLKPRQVKFWFQNRRTQMK 97 688999***********************************************998 PP | |||||||
2 | START | 154.4 | 9.7e-49 | 242 | 466 | 3 | 206 |
HHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS..............SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEE CS START 3 aeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv.............dsgealrasgvvdmvlallveellddkeqWdetla....kae 80 a +aa++l++k +ep+Wv+ +n +evl +e s+ + +ea r++++v+m++ +lv +ld + +W e ++ ka+ XP_010933428.1 242 AMTAAEQLLRKCHTNEPLWVRNG--SNAMEVLDLEEHSRMfpwpmdlkqlhgdFGTEATRDTALVIMNSITLVDAFLDAN-KWMELFPslvsKAK 333 678999***************99..**********99999************99**************************.************** PP EEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEE CS START 81 tlevissg......galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwv 167 t++vi +g g l+lm+aelq+lsplvp R+ +f Ry++q +++g+w+ivd vd + + s+ R +++pSg++i++++ng+s+v+w+ XP_010933428.1 334 TVQVIAPGisthgnGSLHLMQAELQFLSPLVPaREAYFFRYCQQnSEEGTWMIVDFPVDGFHDGL-DTSFPRYRRRPSGCVIQDMPNGYSRVIWI 427 ***************************************************************98.9**************************** PP E-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 168 ehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 ehv+++ + h++++++v+sg+a+ga +wv+ lqrqce+ XP_010933428.1 428 EHVEVENKPLHQVFNQFVSSGMAFGATRWVSILQRQCER 466 *************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.46E-20 | 25 | 100 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.6E-22 | 26 | 100 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.957 | 39 | 99 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.5E-19 | 40 | 103 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.1E-18 | 42 | 97 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.60E-19 | 42 | 100 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 74 | 97 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 43.912 | 231 | 469 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.83E-30 | 232 | 468 | No hit | No description |
CDD | cd08875 | 3.55E-111 | 235 | 465 | No hit | No description |
SMART | SM00234 | 9.0E-30 | 240 | 466 | IPR002913 | START domain |
Pfam | PF01852 | 1.4E-40 | 242 | 466 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 6.2E-5 | 319 | 450 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 2.01E-16 | 484 | 664 | No hit | No description |
SuperFamily | SSF55961 | 2.01E-16 | 695 | 732 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 748 aa Download sequence Send to blast |
MVMGRGGRKE EEMESGSGSG HIDGVSCSEE QDNEQQQPPA KKKRYHRHTA HQIQEMEALF 60 KECPHPDDKQ RLKLSHELGL KPRQVKFWFQ NRRTQMKAQQ DRQDNVILRA ENESLKNENF 120 RLQAAIRNVV CPNCGGPAIL GEMCFDEQHL RIENARLKEE LERLSCITSR YGSRAAQPLG 180 PAPSLLPPSL DLHMGMYSGH FNEHPIVSCT DIIPEPPISD GHQPFSGIVI MDHDKPLVLD 240 LAMTAAEQLL RKCHTNEPLW VRNGSNAMEV LDLEEHSRMF PWPMDLKQLH GDFGTEATRD 300 TALVIMNSIT LVDAFLDANK WMELFPSLVS KAKTVQVIAP GISTHGNGSL HLMQAELQFL 360 SPLVPAREAY FFRYCQQNSE EGTWMIVDFP VDGFHDGLDT SFPRYRRRPS GCVIQDMPNG 420 YSRVIWIEHV EVENKPLHQV FNQFVSSGMA FGATRWVSIL QRQCERLASL MAKNISDLGV 480 IPSPEARKNM MKLSQRMIRT FCASISASEV QSWTALSDSS DDTIRVTTRK NTEPGQPNGV 540 ILSAVSTTWL PFPHQQVFEL LTDERCRCQL EALSNGNSFH EVAHIANGSH PRNCVSLLRI 600 NAASNSSQNV ELLLQESSTH PSGGSLVVYA TVDVDAVQVA MSGEDSSFIP LLPTGFIISP 660 ADPPTFSGVT DAFPSPSTDV DGTATSCGGD GSATGCLLTV AMQVLASAVP SAKLQLSSVT 720 AINNHLCSAV QQISTALGAX AEPVIASL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_029123145.1 | 0.0 | LOW QUALITY PROTEIN: homeobox-leucine zipper protein ROC3 | ||||
Swissprot | A2ZAI7 | 0.0 | ROC3_ORYSI; Homeobox-leucine zipper protein ROC3 | ||||
Swissprot | Q336P2 | 0.0 | ROC3_ORYSJ; Homeobox-leucine zipper protein ROC3 | ||||
TrEMBL | A0A2H3YTV6 | 0.0 | A0A2H3YTV6_PHODC; homeobox-leucine zipper protein ROC3-like | ||||
STRING | XP_008803566.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7846 | 34 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G46880.1 | 0.0 | homeobox-7 |
Publications ? help Back to Top | |||
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