PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

XP_010933179.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

C2H2

Protein Properties

Length: 276aa MW: 29400.2 Da PI: 7.7827

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010933179.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	10.8	0.0016	123	145	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+k+F++ L H +H XP_010933179.1 123 YECKTCNKCFPSFQALGGHRTSH 145 99*********999998888777 PP
2	zf-C2H2	13.3	0.00025	189	211	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F++ L H+r+H XP_010933179.1 189 HECSICGSEFNSGQALGGHMRRH 211 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.49E-8	122	145	No hit	No description
Pfam	PF13912	2.5E-11	122	147	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	11.884	123	150	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.11	123	145	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	125	145	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.49E-8	184	211	No hit	No description
Pfam	PF13912	7.1E-12	188	212	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.598	189	211	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.021	189	211	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	191	211	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence Send to blast
METPEEAMGS SSTTSNGVGD CTHGAATVAV KRKRTKRQKI HPPALQAAAA AFTDSSSASS 60 ADGNRGSVTE EEEDMANCLI LLAQGHALDA GAKVESPAEE KFTSRRLTEA ATTTNGKAGF 120 YVYECKTCNK CFPSFQALGG HRTSHKKPKP AVVAPVAEGK KEMVDKDMVQ ISMNSLSKAI 180 ASSVKPRVHE CSICGSEFNS GQALGGHMRR HRPLVIPEAP EVKKERTILS LDLNLPAPAD 240 DEQAELRRPS SPAFSFASER PLIFSASASA LVDCHY

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010933179.1	0.0	zinc finger protein ZAT5
TrEMBL	A0A2H3YN25	1e-158	A0A2H3YN25_PHODC; zinc finger protein ZAT5-like
STRING	XP_008801217.1	1e-159	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2013	32	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04390.1	5e-50	C2H2 family protein