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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010933134.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | C2H2 | ||||||||
Protein Properties | Length: 215aa MW: 23907.5 Da PI: 5.7181 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.8 | 8.4e-05 | 51 | 73 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++ F++ L H+++H XP_010933134.1 51 YTCSFCKREFRSAQALGGHMNVH 73 9********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.39E-6 | 48 | 77 | No hit | No description |
SMART | SM00355 | 0.0038 | 51 | 73 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.24 | 51 | 78 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.4E-6 | 51 | 74 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 53 | 73 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MERCGRSSRD NNINSSNNNK VREPWGYSQV GKGNTPCSGL IGGFSWPPRS YTCSFCKREF 60 RSAQALGGHM NVHRRDRARL RQSPPWDPPL SNPNPNPNPN LPGTFIPNLN VSPSIASDPK 120 LSPRTHRFPS LLSPLTHFSS SSSSIYSTEL FCSRGGDLRG METVEGVEEL RDIVEEGTDD 180 VLRKETELVR LDLEIGTCGD SEEDDLDLEL RLGFT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 5e-14 | 46 | 73 | 2 | 29 | superman protein |
2l1o_A | 5e-14 | 46 | 73 | 2 | 29 | Transcriptional regulator SUPERMAN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010933134.1 | 1e-156 | transcriptional regulator SUPERMAN-like | ||||
TrEMBL | A0A2H3Y6W1 | 1e-116 | A0A2H3Y6W1_PHODC; transcriptional regulator SUPERMAN-like | ||||
STRING | XP_008794310.1 | 1e-117 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4667 | 30 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23130.1 | 3e-24 | C2H2 family protein |