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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010932880.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | bHLH | ||||||||
Protein Properties | Length: 259aa MW: 29106.3 Da PI: 9.9891 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 22.1 | 2.7e-07 | 104 | 148 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h +rEr+RR+++ ++++ L ++l ++ K +K +i++ A ++++L XP_010932880.1 104 HMMRERQRREKLSQSYADLHSMLSSR-----SKGDKNSIVQSAAVCVREL 148 889**********************7.....4677777777776666655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.115 | 99 | 148 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.96E-10 | 102 | 166 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.86E-5 | 103 | 149 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 6.8E-8 | 103 | 165 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.3E-4 | 104 | 142 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.7E-4 | 105 | 154 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MESFASFQEE LFHGDNMPYW AFSPGLAFDL IAAVPEPALV EPPVVLRSAF TLYTRRENEH 60 MVGDSSSGAG GRRNIHRRVI DMLRRIPQAK EECKGVEMSR GFRHMMRERQ RREKLSQSYA 120 DLHSMLSSRS KGDKNSIVQS AAVCVRELKV VKDQLQRRNE ELKSMILGSN GRTEEAKVNF 180 RVANPSSAID SLIGALRCLK SMDVKARAIR SHLSGHELSA TMSIDTKVAA GEVERAVEGA 240 LREAEEKLLR PFPRTHGWS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May act on an initial response of jasmonate-regulated gene expression toward drought tolerance as part of a BHLH148-TIFY11D/JAZ12-COI1A complex. {ECO:0000269|PubMed:21332845}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA), methyl jasmonate (MeJA), drought, cold, salt and wounding. {ECO:0000269|PubMed:21332845}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_029122929.1 | 0.0 | transcription factor BHLH148 | ||||
Swissprot | Q75KV9 | 2e-67 | BH148_ORYSJ; Transcription factor BHLH148 | ||||
TrEMBL | A0A2H3X3S2 | 1e-155 | A0A2H3X3S2_PHODC; transcription factor BHLH148-like | ||||
STRING | XP_008777863.1 | 1e-156 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5940 | 34 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43650.1 | 3e-30 | bHLH family protein |
Publications ? help Back to Top | |||
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