PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010932712.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | GRAS | ||||||||
Protein Properties | Length: 503aa MW: 56465 Da PI: 6.9993 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 376.3 | 3.8e-115 | 132 | 502 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPilkfs 94 lv+lL++cAeav+ +d ++a++lL +l+ +a g+++qR+a++f+++L+ rla + + + ++ p + + + s ++ al l +e++P+l+f+ XP_010932712.1 132 LVQLLISCAEAVACRDRAQASTLLHELKANALVLGTSFQRVASCFVQGLSDRLALvQPLGAVGIIGPATVPATASGRKEEALALAYELCPYLQFG 226 689***************************************************94445667777888888788889999999************ PP GRAS 95 hltaNqaIleavegeervHiiDfdis....qGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184 h++aN Ilea+ege+ vH++D++++ +G QW L+++La+R+++ p ++RiTgvg+ + ++l+++g+ L+ A++lg+++ef v +++ XP_010932712.1 227 HFVANASILEAFEGENLVHVVDLGMTmglpHGHQWRKLIDSLADRTSPRPrRIRITGVGA----QGDRLKAIGNELEFCAQKLGINLEFFV-IER 316 ***********************9882333567*************998879********....9*************************9.79* PP GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres 279 +le++++e+L++++gE+l+Vn++lqlh +++es + +vL+++ +lsP+v+v+veq+a+hn++ Fl rf+eal+yysa+fdsl+a lpr + XP_010932712.1 317 NLENFSPEDLELEEGEVLVVNSMLQLHCVVKESRGALN---SVLQMIHELSPRVLVLVEQDASHNGPFFLGRFMEALHYYSAIFDSLDAMLPRYD 408 ******************************88877777...8***************************************************** PP GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373 +r+kvE++++++ei+n+v+ceg +r+erhe++ +Wr+r+++aGF+p+p++ ++qak l kv +gy++ ee+g+lvlgWk++p++++S+W XP_010932712.1 409 TKRAKVEQFYFAEEIKNIVSCEGPARVERHERVDQWRRRMSRAGFQPAPIKR--MAQAKQWLDKVRaCEGYTIAEEKGCLVLGWKSKPIIAASCW 501 **************************************************75..789*********9**************************** PP GRAS 374 r 374 + XP_010932712.1 502 K 502 8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 57.627 | 106 | 483 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.3E-112 | 132 | 502 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 503 aa Download sequence Send to blast |
MSHGPYLQLQ QQQLQQLAYN EEGEDENGLK LTLSHMAKMA PYPSTCLLPT WDHSFPLSLP 60 PPPLELTRRC KKPRINSDTM TPNQVNNGKQ SNPLRKLQFR DHVQNYKQKF GVLEALEEPV 120 EGELVEEGGM RLVQLLISCA EAVACRDRAQ ASTLLHELKA NALVLGTSFQ RVASCFVQGL 180 SDRLALVQPL GAVGIIGPAT VPATASGRKE EALALAYELC PYLQFGHFVA NASILEAFEG 240 ENLVHVVDLG MTMGLPHGHQ WRKLIDSLAD RTSPRPRRIR ITGVGAQGDR LKAIGNELEF 300 CAQKLGINLE FFVIERNLEN FSPEDLELEE GEVLVVNSML QLHCVVKESR GALNSVLQMI 360 HELSPRVLVL VEQDASHNGP FFLGRFMEAL HYYSAIFDSL DAMLPRYDTK RAKVEQFYFA 420 EEIKNIVSCE GPARVERHER VDQWRRRMSR AGFQPAPIKR MAQAKQWLDK VRACEGYTIA 480 EEKGCLVLGW KSKPIIAASC WKC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 6e-61 | 117 | 501 | 4 | 378 | Protein SCARECROW |
5b3h_A | 6e-61 | 117 | 501 | 3 | 377 | Protein SCARECROW |
5b3h_D | 6e-61 | 117 | 501 | 3 | 377 | Protein SCARECROW |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010932712.1 | 0.0 | DELLA protein RGL1 | ||||
TrEMBL | A0A2H3YKS8 | 0.0 | A0A2H3YKS8_PHODC; scarecrow-like protein 21 | ||||
STRING | XP_008799986.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5640 | 33 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66350.1 | 1e-64 | RGA-like 1 |