PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010932712.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family GRAS
Protein Properties Length: 503aa    MW: 56465 Da    PI: 6.9993
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010932712.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS376.33.8e-1151325021374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPilkfs 94 
                     lv+lL++cAeav+ +d ++a++lL +l+ +a   g+++qR+a++f+++L+ rla  +  + + ++ p + + + s ++  al l +e++P+l+f+
  XP_010932712.1 132 LVQLLISCAEAVACRDRAQASTLLHELKANALVLGTSFQRVASCFVQGLSDRLALvQPLGAVGIIGPATVPATASGRKEEALALAYELCPYLQFG 226
                     689***************************************************94445667777888888788889999999************ PP

            GRAS  95 hltaNqaIleavegeervHiiDfdis....qGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184
                     h++aN  Ilea+ege+ vH++D++++    +G QW  L+++La+R+++ p ++RiTgvg+    + ++l+++g+ L+  A++lg+++ef v +++
  XP_010932712.1 227 HFVANASILEAFEGENLVHVVDLGMTmglpHGHQWRKLIDSLADRTSPRPrRIRITGVGA----QGDRLKAIGNELEFCAQKLGINLEFFV-IER 316
                     ***********************9882333567*************998879********....9*************************9.79* PP

            GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres 279
                     +le++++e+L++++gE+l+Vn++lqlh +++es    +   +vL+++ +lsP+v+v+veq+a+hn++ Fl rf+eal+yysa+fdsl+a lpr +
  XP_010932712.1 317 NLENFSPEDLELEEGEVLVVNSMLQLHCVVKESRGALN---SVLQMIHELSPRVLVLVEQDASHNGPFFLGRFMEALHYYSAIFDSLDAMLPRYD 408
                     ******************************88877777...8***************************************************** PP

            GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
                      +r+kvE++++++ei+n+v+ceg +r+erhe++ +Wr+r+++aGF+p+p++   ++qak  l kv   +gy++ ee+g+lvlgWk++p++++S+W
  XP_010932712.1 409 TKRAKVEQFYFAEEIKNIVSCEGPARVERHERVDQWRRRMSRAGFQPAPIKR--MAQAKQWLDKVRaCEGYTIAEEKGCLVLGWKSKPIIAASCW 501
                     **************************************************75..789*********9**************************** PP

            GRAS 374 r 374
                     +
  XP_010932712.1 502 K 502
                     8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.627106483IPR005202Transcription factor GRAS
PfamPF035141.3E-112132502IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MSHGPYLQLQ QQQLQQLAYN EEGEDENGLK LTLSHMAKMA PYPSTCLLPT WDHSFPLSLP  60
PPPLELTRRC KKPRINSDTM TPNQVNNGKQ SNPLRKLQFR DHVQNYKQKF GVLEALEEPV  120
EGELVEEGGM RLVQLLISCA EAVACRDRAQ ASTLLHELKA NALVLGTSFQ RVASCFVQGL  180
SDRLALVQPL GAVGIIGPAT VPATASGRKE EALALAYELC PYLQFGHFVA NASILEAFEG  240
ENLVHVVDLG MTMGLPHGHQ WRKLIDSLAD RTSPRPRRIR ITGVGAQGDR LKAIGNELEF  300
CAQKLGINLE FFVIERNLEN FSPEDLELEE GEVLVVNSML QLHCVVKESR GALNSVLQMI  360
HELSPRVLVL VEQDASHNGP FFLGRFMEAL HYYSAIFDSL DAMLPRYDTK RAKVEQFYFA  420
EEIKNIVSCE GPARVERHER VDQWRRRMSR AGFQPAPIKR MAQAKQWLDK VRACEGYTIA  480
EEKGCLVLGW KSKPIIAASC WKC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A6e-611175014378Protein SCARECROW
5b3h_A6e-611175013377Protein SCARECROW
5b3h_D6e-611175013377Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010932712.10.0DELLA protein RGL1
TrEMBLA0A2H3YKS80.0A0A2H3YKS8_PHODC; scarecrow-like protein 21
STRINGXP_008799986.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56403354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.11e-64RGA-like 1